Citing angsd: Difference between revisions

Revision as of 11:40, 29 June 2013

Currently there is not publication for angsd. However, many of the methods implemented here are published.

allele estimation from genotype likelihoods

SNP calling based on genotype likelihoods

same as in samtools Li2011

same as in gatk

same as in soapSNP

same as in kim2011

using score statistic Skotte2012

using allele frequencies kim2011

Estimating the site frequency spectrum Nielsen2012

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	Currently there is not publication for angsd. However, many of the ~~method~~ implemented here are published.		Currently there is not publication for angsd. However, many of the methods implemented here are published.

	==Methods==		==Methods==