ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
Installation: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
|||
| Line 2: | Line 2: | ||
The source code is avaible as a tarball and be download here | The source code is avaible as a tarball and be download here | ||
[http://popgen.dk/software/download/angsd/angsd0. | [http://popgen.dk/software/download/angsd/angsd0.43.tar.gz] | ||
Earlier versions from here | |||
http://popgen.dk/software/download/angsd/angsd0.43.tar.gz | |||
=Install= | =Install= | ||
Revision as of 20:42, 22 September 2012
Download
The source code is avaible as a tarball and be download here [1] Earlier versions from here http://popgen.dk/software/download/angsd/angsd0.43.tar.gz
Install
Unpack the tarball
Unix
The software can be compiled using make
cd angsd0.3 make
zlib needs to be installed on your system.
Misc folder
Misc folder contains:
1. simnextgen a program for simulating genotype likelihoods 2. getUnfolded, simnextgen only outputs the true folded frequency spectra. getUnfolded uses the "true" genotypes to estimate the unfolded spectra. 3. testfolded/optimSFS uses the .sfs output from -realSFS 1 to estimate the site frequency spectra polarized to the ancestral type.