ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Albrecht
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15 February 2016
- 11:2111:21, 15 February 2016 diff hist +81 Abbababa No edit summary
8 February 2016
- 17:2417:24, 8 February 2016 diff hist +125 Fasta →EBD
- 17:1917:19, 8 February 2016 diff hist −2 Fasta →EBD
- 17:1917:19, 8 February 2016 diff hist −143 Fasta No edit summary
- 17:1817:18, 8 February 2016 diff hist +3 Fasta No edit summary
- 17:1717:17, 8 February 2016 diff hist +2 Fasta →Brief Overview
- 17:1517:15, 8 February 2016 diff hist +131 Fasta →Brief Overview
- 16:4016:40, 8 February 2016 diff hist +246 Fasta →Options
28 January 2016
- 11:1711:17, 28 January 2016 diff hist +115 Haploid calling No edit summary
22 January 2016
- 14:3514:35, 22 January 2016 diff hist +3 Abbababa →Options
- 14:3514:35, 22 January 2016 diff hist +346 Abbababa No edit summary
- 12:0112:01, 22 January 2016 diff hist +54 Abbababa →Example
- 11:4711:47, 22 January 2016 diff hist +27 Plink →NB
- 11:4611:46, 22 January 2016 diff hist −1 Plink →Example
- 11:4411:44, 22 January 2016 diff hist +10 Genotype calling →Example
3 January 2016
- 19:2419:24, 3 January 2016 diff hist +3 MediaWiki:Sidebar No edit summary
- 19:2119:21, 3 January 2016 diff hist +6 MediaWiki:Sidebar No edit summary
- 16:2816:28, 3 January 2016 diff hist −32 Haploid calling →Output
- 16:2716:27, 3 January 2016 diff hist +2,256 N Haploid calling Created page with "Simple haploid output based on sampling or consensus. __TOC__ <classdiagram type="dir:LR"> [BAM files{bg:orange}]->[Sequence data|Random base;Consensus base] [sequence da..."
- 16:1516:15, 3 January 2016 diff hist +35 MediaWiki:Sidebar No edit summary
16 December 2015
- 17:3017:30, 16 December 2015 diff hist +59 MsToGlf No edit summary
4 December 2015
- 17:1117:11, 4 December 2015 diff hist −1 Filters →Extra
- 17:1117:11, 4 December 2015 diff hist −98 Filters →Extra
- 16:2316:23, 4 December 2015 diff hist +18 Input →Genotype Probability Files
- 16:2216:22, 4 December 2015 diff hist 0 Input →Tutorial
- 16:2216:22, 4 December 2015 diff hist +1,823 Input →-glf
- 16:1816:18, 4 December 2015 diff hist +790 Supersim No edit summary current
- 15:5515:55, 4 December 2015 diff hist −1 Input →Arguments
- 15:5515:55, 4 December 2015 diff hist 0 Input →Example
- 15:5415:54, 4 December 2015 diff hist 0 Input →Example
- 15:5415:54, 4 December 2015 diff hist 0 Input →Tutorial
- 15:5315:53, 4 December 2015 diff hist +4,725 Input →Genotype Probability Files
- 15:5215:52, 4 December 2015 diff hist −488 Input →VCF files
- 15:4615:46, 4 December 2015 diff hist +4,114 Input →VCF files
- 15:1715:17, 4 December 2015 diff hist −161 Input →Genotype Probability Files
- 15:1615:16, 4 December 2015 diff hist +29 Input No edit summary
- 15:1315:13, 4 December 2015 diff hist +788 Input →Genotype Probability Files
- 14:5614:56, 4 December 2015 diff hist +51 Input →Pileup files
- 14:5214:52, 4 December 2015 diff hist −5 Input →Tutorial
- 14:3314:33, 4 December 2015 diff hist +43 Input →Genotype Probability Files
- 14:2314:23, 4 December 2015 diff hist −12 Input No edit summary
- 14:2114:21, 4 December 2015 diff hist +11 Input No edit summary
- 14:1914:19, 4 December 2015 diff hist +62 Input →Pileup files
- 13:3113:31, 4 December 2015 diff hist +2,787 Input →Pileup files
- 12:0512:05, 4 December 2015 diff hist +14 Input →BAM/CRAM
- 12:0112:01, 4 December 2015 diff hist 0 Input No edit summary
- 12:0112:01, 4 December 2015 diff hist +535 Input →BAM/CRAM
- 11:4811:48, 4 December 2015 diff hist +17 Input →Sequence data (BAM/CRAM/mpileup)
- 11:3711:37, 4 December 2015 diff hist +48 Input →BAM/CRAM
- 11:3711:37, 4 December 2015 diff hist +120 Input →Sequence data (BAM/CRAM/mpileup)
- 11:2811:28, 4 December 2015 diff hist −100 Input No edit summary
- 11:2711:27, 4 December 2015 diff hist +234 Input No edit summary
- 11:2211:22, 4 December 2015 diff hist +12 Input No edit summary
- 11:2011:20, 4 December 2015 diff hist −367 Quick Start No edit summary
- 11:1911:19, 4 December 2015 diff hist −161 Quick Start →Examples
- 10:5610:56, 4 December 2015 diff hist +12 Quick Start →Ancestral fasta file for hg19
- 10:5210:52, 4 December 2015 diff hist +33 Quick Start No edit summary
- 10:4910:49, 4 December 2015 diff hist −92 MediaWiki:Sitenotice No edit summary
19 November 2015
- 17:1317:13, 19 November 2015 diff hist +35 MediaWiki:Sidebar No edit summary
12 November 2015
- 20:1920:19, 12 November 2015 diff hist +103 MsToGlf No edit summary
11 July 2015
- 15:5115:51, 11 July 2015 diff hist +811 Contamination No edit summary current
28 June 2015
- 14:0114:01, 28 June 2015 diff hist +1 Plink No edit summary
5 April 2015
- 19:5219:52, 5 April 2015 diff hist +318 Genotype calling →options
15 December 2014
- 19:5019:50, 15 December 2014 diff hist −8 SYKmaf Undo revision 2344 by Albrecht (talk) current
- 19:4919:49, 15 December 2014 diff hist +8 SYKmaf →ML estimator with unknown minor
25 August 2014
- 13:5813:58, 25 August 2014 diff hist −566 Association →Output
- 13:5613:56, 25 August 2014 diff hist +228 Association →Score statistic
- 13:4913:49, 25 August 2014 diff hist +201 Change log →Latest
27 June 2014
- 14:3514:35, 27 June 2014 diff hist −1,005 Contamination →method
- 14:3514:35, 27 June 2014 diff hist +1,005 N Rasmussen2011 Created page with "[http://www.ncbi.nlm.nih.gov/entrez?Db=pubmed&Cmd=ShowDetailView&uid=21940856 PMID 21940856], [http://www.bioinformatics.org/texmed/cgi-bin/list.cgi?PMID=21940856 bibtex ] Ras..." current
- 14:3414:34, 27 June 2014 diff hist +59 Citing angsd No edit summary
- 14:3214:32, 27 June 2014 diff hist +174 Orlando2013 No edit summary current
- 14:2914:29, 27 June 2014 diff hist +1,084 Contamination No edit summary
- 14:0614:06, 27 June 2014 diff hist +35 Contamination No edit summary
- 13:5913:59, 27 June 2014 diff hist +401 Contamination →Output
26 June 2014
- 13:2213:22, 26 June 2014 diff hist +14 Thetas,Tajima,Neutrality tests →Example
- 13:1813:18, 26 June 2014 diff hist −65 Thetas,Tajima,Neutrality tests →Example
- 13:1613:16, 26 June 2014 diff hist +203 Thetas,Tajima,Neutrality tests →Example
- 12:4512:45, 26 June 2014 diff hist +131 Major Minor No edit summary
- 12:4212:42, 26 June 2014 diff hist +53 Major Minor →Pre specified Major using a reference
- 12:4112:41, 26 June 2014 diff hist −1 Major Minor →Pre specified Major using a reference
- 12:3412:34, 26 June 2014 diff hist −34 User:Albrecht Blanked the page current
24 June 2014
- 12:4612:46, 24 June 2014 diff hist +3 Input →Brief Overview
13 May 2014
- 17:1517:15, 13 May 2014 diff hist +556 Genotype Likelihoods →Output
23 April 2014
- 16:1916:19, 23 April 2014 diff hist +190 Major Minor No edit summary
- 16:1616:16, 23 April 2014 diff hist −111 MediaWiki:Sitenotice No edit summary
- 16:1516:15, 23 April 2014 diff hist +12 ANGSD No edit summary
6 March 2014
- 13:2613:26, 6 March 2014 diff hist −8 SFS Estimation →How to plot
- 13:2513:25, 6 March 2014 diff hist −6 SFS Estimation →How to plot
- 13:2513:25, 6 March 2014 diff hist −19 SFS Estimation →Format specification of binary .saf file
- 13:2113:21, 6 March 2014 diff hist −56 SFS Estimation →Folded spectra
- 13:1613:16, 6 March 2014 diff hist +49 SFS Estimation →Interpretation of the emOptim2 output file
- 13:1513:15, 6 March 2014 diff hist +347 SFS Estimation →Options
- 12:2712:27, 6 March 2014 diff hist +148 SFS Estimation →Options
- 12:2612:26, 6 March 2014 diff hist +52 SFS Estimation →Posterior per-site distributions of the sample allele frequency
- 12:2312:23, 6 March 2014 diff hist +13 SFS Estimation →Interpretation of output file
- 12:2312:23, 6 March 2014 diff hist +47 SFS Estimation →Interpretation of output file
- 12:2012:20, 6 March 2014 diff hist −3 SFS Estimation →Example
- 12:2012:20, 6 March 2014 diff hist +155 SFS Estimation →Example
- 12:1812:18, 6 March 2014 diff hist +188 SFS Estimation →Brief Overview