ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Albrecht
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16 May 2016
- 13:2113:21, 16 May 2016 diff hist +8 PCA MDS →IBS
- 13:2013:20, 16 May 2016 diff hist +90 PCA MDS →Covariance
- 12:0712:07, 16 May 2016 diff hist 0 PCA MDS →Options
13 May 2016
- 13:3613:36, 13 May 2016 diff hist +188 PCA No edit summary
11 May 2016
- 10:3210:32, 11 May 2016 diff hist −95 PCA MDS →samples base *.ibsMat
28 April 2016
- 11:1611:16, 28 April 2016 diff hist +93 Genotype Likelihoods →SYK (Kim et al.)
- 11:1311:13, 28 April 2016 diff hist +11 Genotype Likelihoods →SYK (Kim et al.)
27 April 2016
- 18:5318:53, 27 April 2016 diff hist +2 PCA MDS →Output
- 18:5218:52, 27 April 2016 diff hist +6 PCA MDS →MDS/PCA using R
- 18:5118:51, 27 April 2016 diff hist 0 N File:PCA MDS.png No edit summary current
- 18:5118:51, 27 April 2016 diff hist 0 PCA MDS →MDS/PCA using R
- 18:4918:49, 27 April 2016 diff hist 0 File:IBD PCA.pdf Albrecht uploaded a new version of "File:IBD PCA.pdf" current
- 17:0717:07, 27 April 2016 diff hist +4 PCA MDS →MDS/PCA using R
- 17:0717:07, 27 April 2016 diff hist 0 N File:IBD PCA.pdf No edit summary
- 17:0617:06, 27 April 2016 diff hist +18 PCA MDS →MDS/PCA using R
- 17:0317:03, 27 April 2016 diff hist +406 PCA MDS No edit summary
- 17:0117:01, 27 April 2016 diff hist +54 PCA MDS →Model
- 16:4816:48, 27 April 2016 diff hist +1,455 PCA MDS →Output
- 16:4516:45, 27 April 2016 diff hist −160 PCA MDS →samples base *ibsMat
- 16:4416:44, 27 April 2016 diff hist +1,454 PCA MDS →Output
- 16:4316:43, 27 April 2016 diff hist +96 PCA MDS →Output
- 16:4216:42, 27 April 2016 diff hist −272 PCA MDS →Output
- 16:4116:41, 27 April 2016 diff hist +2,921 PCA MDS →Output
- 16:3416:34, 27 April 2016 diff hist −87 PCA MDS No edit summary
- 16:3316:33, 27 April 2016 diff hist +18 PCA MDS →Options
- 16:3216:32, 27 April 2016 diff hist +175 PCA MDS →Options
- 12:4712:47, 27 April 2016 diff hist +4,143 PCA MDS →single read sampling approach for PCA or MDS
- 12:2412:24, 27 April 2016 diff hist +143 PCA MDS No edit summary
- 12:2312:23, 27 April 2016 diff hist 0 PCA No edit summary
- 12:2212:22, 27 April 2016 diff hist +632 PCA No edit summary
- 12:2212:22, 27 April 2016 diff hist +48 N PCA MDS Created page with "= single read sampling approach for PCA or MDS ="
- 12:1212:12, 27 April 2016 diff hist +62 MediaWiki:Sidebar No edit summary
10 April 2016
- 18:0218:02, 10 April 2016 diff hist +8 HWE test No edit summary
- 17:5917:59, 10 April 2016 diff hist +207 HWE test No edit summary
- 17:4817:48, 10 April 2016 diff hist +2 HWE and Inbreeding estimates →Site estimate of inbreeding coefficient (HWE test)
- 17:2617:26, 10 April 2016 diff hist +5 HWE test No edit summary
- 17:2617:26, 10 April 2016 diff hist +184 HWE test →Use as a filter
- 17:1617:16, 10 April 2016 diff hist +567 HWE test No edit summary
- 17:0617:06, 10 April 2016 diff hist 0 HWE and Inbreeding estimates →Site estimate of inbreeding coefficient (HWE test)
- 17:0517:05, 10 April 2016 diff hist 0 HWE test →Output
- 17:0417:04, 10 April 2016 diff hist +7 HWE test →Output
- 17:0417:04, 10 April 2016 diff hist +439 HWE test →Output
- 17:0017:00, 10 April 2016 diff hist +1,847 N HWE test Created page with "Test for Hardy Weinberg equilibrium based on genotype likelihoods. This class works both as a filter for all other classes and outputs the results in a file. If you want to ..."
- 16:4516:45, 10 April 2016 diff hist +32 MediaWiki:Sidebar No edit summary
14 March 2016
- 10:3310:33, 14 March 2016 diff hist 0 Haploid calling →Output
- 10:3310:33, 14 March 2016 diff hist +168 Haploid calling →Output
13 March 2016
- 13:3413:34, 13 March 2016 diff hist +2 Haploid calling No edit summary
- 13:3313:33, 13 March 2016 diff hist 0 Haploid calling No edit summary
11 March 2016
- 11:4611:46, 11 March 2016 diff hist +2,758 Abbababa No edit summary current
8 March 2016
- 12:1212:12, 8 March 2016 diff hist −71 Association →Case control association using allele frequencies
15 February 2016
- 11:2111:21, 15 February 2016 diff hist +81 Abbababa No edit summary
8 February 2016
- 17:2417:24, 8 February 2016 diff hist +125 Fasta →EBD
- 17:1917:19, 8 February 2016 diff hist −2 Fasta →EBD
- 17:1917:19, 8 February 2016 diff hist −143 Fasta No edit summary
- 17:1817:18, 8 February 2016 diff hist +3 Fasta No edit summary
- 17:1717:17, 8 February 2016 diff hist +2 Fasta →Brief Overview
- 17:1517:15, 8 February 2016 diff hist +131 Fasta →Brief Overview
- 16:4016:40, 8 February 2016 diff hist +246 Fasta →Options
28 January 2016
- 11:1711:17, 28 January 2016 diff hist +115 Haploid calling No edit summary
22 January 2016
- 14:3514:35, 22 January 2016 diff hist +3 Abbababa →Options
- 14:3514:35, 22 January 2016 diff hist +346 Abbababa No edit summary
- 12:0112:01, 22 January 2016 diff hist +54 Abbababa →Example
- 11:4711:47, 22 January 2016 diff hist +27 Plink →NB
- 11:4611:46, 22 January 2016 diff hist −1 Plink →Example
- 11:4411:44, 22 January 2016 diff hist +10 Genotype calling →Example
3 January 2016
- 19:2419:24, 3 January 2016 diff hist +3 MediaWiki:Sidebar No edit summary
- 19:2119:21, 3 January 2016 diff hist +6 MediaWiki:Sidebar No edit summary
- 16:2816:28, 3 January 2016 diff hist −32 Haploid calling →Output
- 16:2716:27, 3 January 2016 diff hist +2,256 N Haploid calling Created page with "Simple haploid output based on sampling or consensus. __TOC__ <classdiagram type="dir:LR"> [BAM files{bg:orange}]->[Sequence data|Random base;Consensus base] [sequence da..."
- 16:1516:15, 3 January 2016 diff hist +35 MediaWiki:Sidebar No edit summary
16 December 2015
- 17:3017:30, 16 December 2015 diff hist +59 MsToGlf No edit summary
4 December 2015
- 17:1117:11, 4 December 2015 diff hist −1 Filters →Extra
- 17:1117:11, 4 December 2015 diff hist −98 Filters →Extra
- 16:2316:23, 4 December 2015 diff hist +18 Input →Genotype Probability Files
- 16:2216:22, 4 December 2015 diff hist 0 Input →Tutorial
- 16:2216:22, 4 December 2015 diff hist +1,823 Input →-glf
- 16:1816:18, 4 December 2015 diff hist +790 Supersim No edit summary current
- 15:5515:55, 4 December 2015 diff hist −1 Input →Arguments
- 15:5515:55, 4 December 2015 diff hist 0 Input →Example
- 15:5415:54, 4 December 2015 diff hist 0 Input →Example
- 15:5415:54, 4 December 2015 diff hist 0 Input →Tutorial
- 15:5315:53, 4 December 2015 diff hist +4,725 Input →Genotype Probability Files
- 15:5215:52, 4 December 2015 diff hist −488 Input →VCF files
- 15:4615:46, 4 December 2015 diff hist +4,114 Input →VCF files
- 15:1715:17, 4 December 2015 diff hist −161 Input →Genotype Probability Files
- 15:1615:16, 4 December 2015 diff hist +29 Input No edit summary
- 15:1315:13, 4 December 2015 diff hist +788 Input →Genotype Probability Files
- 14:5614:56, 4 December 2015 diff hist +51 Input →Pileup files
- 14:5214:52, 4 December 2015 diff hist −5 Input →Tutorial
- 14:3314:33, 4 December 2015 diff hist +43 Input →Genotype Probability Files
- 14:2314:23, 4 December 2015 diff hist −12 Input No edit summary
- 14:2114:21, 4 December 2015 diff hist +11 Input No edit summary
- 14:1914:19, 4 December 2015 diff hist +62 Input →Pileup files
- 13:3113:31, 4 December 2015 diff hist +2,787 Input →Pileup files
- 12:0512:05, 4 December 2015 diff hist +14 Input →BAM/CRAM
- 12:0112:01, 4 December 2015 diff hist 0 Input No edit summary
- 12:0112:01, 4 December 2015 diff hist +535 Input →BAM/CRAM
- 11:4811:48, 4 December 2015 diff hist +17 Input →Sequence data (BAM/CRAM/mpileup)
- 11:3711:37, 4 December 2015 diff hist +48 Input →BAM/CRAM
- 11:3711:37, 4 December 2015 diff hist +120 Input →Sequence data (BAM/CRAM/mpileup)