ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Albrecht
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18 July 2017
- 15:1015:10, 18 July 2017 diff hist −1 HWE test →example
- 15:0815:08, 18 July 2017 diff hist +164 HWE test →example
- 14:5114:51, 18 July 2017 diff hist +2 HWE test →Use as a filter
- 14:5014:50, 18 July 2017 diff hist +13 HWE test No edit summary
- 14:5014:50, 18 July 2017 diff hist −181 HWE test No edit summary
3 March 2017
- 12:1612:16, 3 March 2017 diff hist +170 Filters →Number of non missing individuals
- 11:5811:58, 3 March 2017 diff hist −31 Filters →Extra
- 11:5611:56, 3 March 2017 diff hist +226 Filters →Extra
24 January 2017
- 14:3914:39, 24 January 2017 diff hist −1 Filters →Selected Sites
- 14:2614:26, 24 January 2017 diff hist +151 PCA MDS →Options
- 14:2414:24, 24 January 2017 diff hist +2 PCA MDS →single read sampling approach for PCA or MDS
- 14:2314:23, 24 January 2017 diff hist +263 PCA MDS No edit summary
- 14:1814:18, 24 January 2017 diff hist +1 PCA MDS No edit summary
- 14:1714:17, 24 January 2017 diff hist +26 PCA MDS No edit summary
16 November 2016
- 18:2018:20, 16 November 2016 diff hist +199 Fasta No edit summary
- 18:1918:19, 16 November 2016 diff hist +702 Fasta →Options
- 18:1318:13, 16 November 2016 diff hist +126 Fasta →Brief Overview
14 July 2016
- 16:4616:46, 14 July 2016 diff hist +3 Relatedness →IBS/genotype distribution
- 11:1611:16, 14 July 2016 diff hist +881 Genotype Distribution →Example current
- 11:0211:02, 14 July 2016 diff hist +6,368 Genotype Distribution No edit summary
- 10:4710:47, 14 July 2016 diff hist +94 Genotype Distribution No edit summary
- 10:4310:43, 14 July 2016 diff hist +946 Genotype Distribution No edit summary
- 10:3810:38, 14 July 2016 diff hist +4,100 Genotype Distribution No edit summary
12 July 2016
- 16:2816:28, 12 July 2016 diff hist 0 N File:RatioRel.png No edit summary current
- 16:2816:28, 12 July 2016 diff hist +41 Relatedness →IBS/genotype distribution
- 16:0216:02, 12 July 2016 diff hist +141 Relatedness →IBS/genotype distribution
- 15:5815:58, 12 July 2016 diff hist +302 Relatedness →How to get the IBS pattern
- 15:5515:55, 12 July 2016 diff hist +2 Relatedness No edit summary
- 15:5515:55, 12 July 2016 diff hist +12 N Genotype Distribution Created page with "comming soon"
- 15:5315:53, 12 July 2016 diff hist +299 Relatedness →IBS/genotype distribution
- 15:4715:47, 12 July 2016 diff hist +18 Relatedness No edit summary
- 15:4615:46, 12 July 2016 diff hist +60 Relatedness →IBS/genotype distribution
- 15:4315:43, 12 July 2016 diff hist +126 Relatedness →IBS/genotype distribution
- 15:3015:30, 12 July 2016 diff hist +243 Relatedness No edit summary
- 15:2215:22, 12 July 2016 diff hist +1,185 Relatedness No edit summary
- 15:0615:06, 12 July 2016 diff hist +2 Relatedness →IBS/genotype distribution
- 15:0515:05, 12 July 2016 diff hist +271 Relatedness →IBS/genotype distribution
- 15:0215:02, 12 July 2016 diff hist +87 Relatedness →NGSrelate - estimation of IBD probabilities
- 15:0115:01, 12 July 2016 diff hist −3 Relatedness →IBS/genotype distribution
- 14:5514:55, 12 July 2016 diff hist +444 Relatedness No edit summary
- 14:5314:53, 12 July 2016 diff hist +746 Relatedness No edit summary
- 14:2514:25, 12 July 2016 diff hist +4 Relatedness No edit summary
- 14:2514:25, 12 July 2016 diff hist +4 Relatedness No edit summary
- 14:2514:25, 12 July 2016 diff hist +703 N Relatedness Created page with " * NGSrelate - estimation of kinship coefficients In order to estimate kinship coefficient then population allele frequencies are needed. These can be estimated from data if ..."
- 14:2014:20, 12 July 2016 diff hist +2 MediaWiki:Sidebar No edit summary
- 14:1914:19, 12 July 2016 diff hist +88 MediaWiki:Sidebar No edit summary
7 June 2016
- 17:3317:33, 7 June 2016 diff hist 0 PCA MDS →sampled bases *ibs.gz
31 May 2016
- 14:3114:31, 31 May 2016 diff hist +30 PCA MDS No edit summary
- 13:4713:47, 31 May 2016 diff hist 0 PCA MDS No edit summary
- 13:4613:46, 31 May 2016 diff hist +222 PCA MDS →MDS/PCA using R
16 May 2016
- 13:2113:21, 16 May 2016 diff hist +8 PCA MDS →IBS
- 13:2013:20, 16 May 2016 diff hist +90 PCA MDS →Covariance
- 12:0712:07, 16 May 2016 diff hist 0 PCA MDS →Options
13 May 2016
- 13:3613:36, 13 May 2016 diff hist +188 PCA No edit summary
11 May 2016
- 10:3210:32, 11 May 2016 diff hist −95 PCA MDS →samples base *.ibsMat
28 April 2016
- 11:1611:16, 28 April 2016 diff hist +93 Genotype Likelihoods →SYK (Kim et al.)
- 11:1311:13, 28 April 2016 diff hist +11 Genotype Likelihoods →SYK (Kim et al.)
27 April 2016
- 18:5318:53, 27 April 2016 diff hist +2 PCA MDS →Output
- 18:5218:52, 27 April 2016 diff hist +6 PCA MDS →MDS/PCA using R
- 18:5118:51, 27 April 2016 diff hist 0 N File:PCA MDS.png No edit summary current
- 18:5118:51, 27 April 2016 diff hist 0 PCA MDS →MDS/PCA using R
- 18:4918:49, 27 April 2016 diff hist 0 File:IBD PCA.pdf Albrecht uploaded a new version of "File:IBD PCA.pdf" current
- 17:0717:07, 27 April 2016 diff hist +4 PCA MDS →MDS/PCA using R
- 17:0717:07, 27 April 2016 diff hist 0 N File:IBD PCA.pdf No edit summary
- 17:0617:06, 27 April 2016 diff hist +18 PCA MDS →MDS/PCA using R
- 17:0317:03, 27 April 2016 diff hist +406 PCA MDS No edit summary
- 17:0117:01, 27 April 2016 diff hist +54 PCA MDS →Model
- 16:4816:48, 27 April 2016 diff hist +1,455 PCA MDS →Output
- 16:4516:45, 27 April 2016 diff hist −160 PCA MDS →samples base *ibsMat
- 16:4416:44, 27 April 2016 diff hist +1,454 PCA MDS →Output
- 16:4316:43, 27 April 2016 diff hist +96 PCA MDS →Output
- 16:4216:42, 27 April 2016 diff hist −272 PCA MDS →Output
- 16:4116:41, 27 April 2016 diff hist +2,921 PCA MDS →Output
- 16:3416:34, 27 April 2016 diff hist −87 PCA MDS No edit summary
- 16:3316:33, 27 April 2016 diff hist +18 PCA MDS →Options
- 16:3216:32, 27 April 2016 diff hist +175 PCA MDS →Options
- 12:4712:47, 27 April 2016 diff hist +4,143 PCA MDS →single read sampling approach for PCA or MDS
- 12:2412:24, 27 April 2016 diff hist +143 PCA MDS No edit summary
- 12:2312:23, 27 April 2016 diff hist 0 PCA No edit summary
- 12:2212:22, 27 April 2016 diff hist +632 PCA No edit summary
- 12:2212:22, 27 April 2016 diff hist +48 N PCA MDS Created page with "= single read sampling approach for PCA or MDS ="
- 12:1212:12, 27 April 2016 diff hist +62 MediaWiki:Sidebar No edit summary
10 April 2016
- 18:0218:02, 10 April 2016 diff hist +8 HWE test No edit summary
- 17:5917:59, 10 April 2016 diff hist +207 HWE test No edit summary
- 17:4817:48, 10 April 2016 diff hist +2 HWE and Inbreeding estimates →Site estimate of inbreeding coefficient (HWE test)
- 17:2617:26, 10 April 2016 diff hist +5 HWE test No edit summary
- 17:2617:26, 10 April 2016 diff hist +184 HWE test →Use as a filter
- 17:1617:16, 10 April 2016 diff hist +567 HWE test No edit summary
- 17:0617:06, 10 April 2016 diff hist 0 HWE and Inbreeding estimates →Site estimate of inbreeding coefficient (HWE test)
- 17:0517:05, 10 April 2016 diff hist 0 HWE test →Output
- 17:0417:04, 10 April 2016 diff hist +7 HWE test →Output
- 17:0417:04, 10 April 2016 diff hist +439 HWE test →Output
- 17:0017:00, 10 April 2016 diff hist +1,847 N HWE test Created page with "Test for Hardy Weinberg equilibrium based on genotype likelihoods. This class works both as a filter for all other classes and outputs the results in a file. If you want to ..."
- 16:4516:45, 10 April 2016 diff hist +32 MediaWiki:Sidebar No edit summary
14 March 2016
- 10:3310:33, 14 March 2016 diff hist 0 Haploid calling →Output
- 10:3310:33, 14 March 2016 diff hist +168 Haploid calling →Output
13 March 2016
- 13:3413:34, 13 March 2016 diff hist +2 Haploid calling No edit summary
- 13:3313:33, 13 March 2016 diff hist 0 Haploid calling No edit summary
11 March 2016
- 11:4611:46, 11 March 2016 diff hist +2,758 Abbababa No edit summary current