ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Thorfinn
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16 January 2013
- 19:2919:29, 16 January 2013 diff hist −4 ANGSD No edit summary
4 January 2013
- 14:5014:50, 4 January 2013 diff hist −14 Filters →Major minor
3 January 2013
- 02:5002:50, 3 January 2013 diff hist +61 N Thorfinn Created page with "Check keepsites in -filter check leak in get3likes Thorfinn"
28 December 2012
- 20:0820:08, 28 December 2012 diff hist +133 Bugs No edit summary
- 20:0520:05, 28 December 2012 diff hist +39 Bugs No edit summary
19 December 2012
- 21:3021:30, 19 December 2012 diff hist +155 Filters →Selected Sites
- 21:2821:28, 19 December 2012 diff hist −5 Filters →Selected Sites
- 21:2821:28, 19 December 2012 diff hist +310 Filters →Selected Sites
- 21:1021:10, 19 December 2012 diff hist +21 SFS Estimation No edit summary
- 21:0421:04, 19 December 2012 diff hist +214 SFS Estimation No edit summary
18 December 2012
- 15:2615:26, 18 December 2012 diff hist +18 MediaWiki:Sidebar No edit summary
- 15:2315:23, 18 December 2012 diff hist 0 MediaWiki:Sidebar No edit summary
- 15:2315:23, 18 December 2012 diff hist +5 MediaWiki:Sidebar No edit summary
- 15:2215:22, 18 December 2012 diff hist 0 MediaWiki:Sidebar No edit summary
- 15:1815:18, 18 December 2012 diff hist +7 MediaWiki:Sidebar No edit summary
- 15:1715:17, 18 December 2012 diff hist +8 MediaWiki:Sidebar No edit summary
- 03:3203:32, 18 December 2012 diff hist +445 N Memory Usage Created page with "For large sample sizes and if many threads are allocated to the program the memory usage can become severe. The filewriting has to be done in the correct order, and if some g..." current
- 03:1003:10, 18 December 2012 diff hist +131 Thetas,Tajima,Neutrality tests →.thetas.gz.pestPG
- 03:0903:09, 18 December 2012 diff hist −1 Thetas,Tajima,Neutrality tests →.thetas.gz.pestPG
- 03:0803:08, 18 December 2012 diff hist +2,618 Thetas,Tajima,Neutrality tests →Example Output
- 03:0703:07, 18 December 2012 diff hist +108 Thetas,Tajima,Neutrality tests →Example Output
- 03:0003:00, 18 December 2012 diff hist +6 Thetas,Tajima,Neutrality tests No edit summary
- 03:0003:00, 18 December 2012 diff hist +69 Thetas,Tajima,Neutrality tests →Example Output
- 02:5502:55, 18 December 2012 diff hist −2 Thetas,Tajima,Neutrality tests →Example Output
- 02:5502:55, 18 December 2012 diff hist +1,668 Thetas,Tajima,Neutrality tests No edit summary
- 02:5302:53, 18 December 2012 diff hist +2 Thetas,Tajima,Neutrality tests No edit summary
- 02:5302:53, 18 December 2012 diff hist +508 Thetas,Tajima,Neutrality tests No edit summary
- 02:4402:44, 18 December 2012 diff hist +245 Thetas,Tajima,Neutrality tests No edit summary
- 02:4002:40, 18 December 2012 diff hist +59 N Thetas,Tajima,Neutrality tests Created page with "Angsd can estimate the Tajimas D and other neutrality test."
16 December 2012
- 21:3221:32, 16 December 2012 diff hist −2 Installation No edit summary
- 21:3021:30, 16 December 2012 diff hist 0 ANGSD No edit summary
11 December 2012
- 22:1022:10, 11 December 2012 diff hist +130 Bugs No edit summary
- 22:0622:06, 11 December 2012 diff hist +24 Bugs No edit summary
- 18:1318:13, 11 December 2012 diff hist +23 Filters →Number of non missing individuals
5 December 2012
- 23:3023:30, 5 December 2012 diff hist +4 Bugs →Limitation
- 23:3023:30, 5 December 2012 diff hist +130 Bugs →Limitation
- 23:0823:08, 5 December 2012 diff hist +34 Bugs No edit summary
- 19:2219:22, 5 December 2012 diff hist +90 Allele Frequencies →.mafs
- 19:2019:20, 5 December 2012 diff hist +46 Bugs No edit summary
- 18:5918:59, 5 December 2012 diff hist +2 Allele Frequencies →.mafs
- 18:5918:59, 5 December 2012 diff hist +462 Allele Frequencies →.mafs
4 December 2012
- 18:0218:02, 4 December 2012 diff hist +103 Bugs No edit summary
3 December 2012
- 14:2014:20, 3 December 2012 diff hist −76 Genotype Likelihoods →output genotype likelihoods
- 11:5611:56, 3 December 2012 diff hist +130 Genotype Likelihoods →output genotype likelihoods
30 November 2012
- 19:4619:46, 30 November 2012 diff hist +143 Bugs No edit summary
- 19:4119:41, 30 November 2012 diff hist +49 Bugs No edit summary
28 November 2012
- 12:4012:40, 28 November 2012 diff hist −43 Installation No edit summary
- 12:3012:30, 28 November 2012 diff hist +36 Bugs No edit summary
18 November 2012
- 00:1500:15, 18 November 2012 diff hist +24 Bugs No edit summary
16 November 2012
- 17:1917:19, 16 November 2012 diff hist +87 Bugs No edit summary
15 November 2012
- 00:4300:43, 15 November 2012 diff hist +145 SFS Estimation →Example
1 November 2012
- 15:4915:49, 1 November 2012 diff hist +128 Bugs No edit summary
- 14:4214:42, 1 November 2012 diff hist +59 Bugs No edit summary
- 14:3914:39, 1 November 2012 diff hist +96 Bugs No edit summary
24 October 2012
- 13:0013:00, 24 October 2012 diff hist +191 Glf files No edit summary current
23 October 2012
- 23:3923:39, 23 October 2012 diff hist +89 ANGSD No edit summary
- 22:0222:02, 23 October 2012 diff hist −135 Bugs No edit summary
- 21:5721:57, 23 October 2012 diff hist +297 Bugs No edit summary
- 21:2621:26, 23 October 2012 diff hist +34 Installation →Download
- 21:1421:14, 23 October 2012 diff hist +2 Quick Start →Examples
- 21:1321:13, 23 October 2012 diff hist +661 N Quick Start Created page with "==Whats on this page== This page will contain som random examples which can be used as a quickstart. ===Examples=== Assuming you have a list of bamfiles in in file: 'list.tx..."
- 21:0321:03, 23 October 2012 diff hist −54 Authors No edit summary
- 21:0021:00, 23 October 2012 diff hist −5 Authors No edit summary
- 21:0021:00, 23 October 2012 diff hist +85 Authors No edit summary
- 20:5820:58, 23 October 2012 diff hist −2 Authors →Disclaimer
- 20:5720:57, 23 October 2012 diff hist +97 Authors →Disclaimer
- 20:5620:56, 23 October 2012 diff hist +33 Authors →Disclaimer
- 20:5320:53, 23 October 2012 diff hist +93 Authors →Disclaimer
- 20:5120:51, 23 October 2012 diff hist +78 Authors No edit summary
- 20:4020:40, 23 October 2012 diff hist +2 Authors No edit summary
- 20:4020:40, 23 October 2012 diff hist +34 Authors No edit summary
- 19:1319:13, 23 October 2012 diff hist +86 Introduction No edit summary current
- 19:1019:10, 23 October 2012 diff hist +1 Authors No edit summary
- 19:0519:05, 23 October 2012 diff hist +80 N Authors Created page with "Thorfinn Korneliussen thorfinn@binf.ku.dk anders gaylordsen albrecht@binf.ku.dk"
- 18:3718:37, 23 October 2012 diff hist +88 Bugs No edit summary
- 09:1509:15, 23 October 2012 diff hist 0 Introduction No edit summary
- 09:1509:15, 23 October 2012 diff hist +1 Introduction No edit summary
- 09:1409:14, 23 October 2012 diff hist +292 Introduction No edit summary
- 09:0809:08, 23 October 2012 diff hist +39 Introduction No edit summary
- 09:0709:07, 23 October 2012 diff hist +2 Introduction No edit summary
- 09:0709:07, 23 October 2012 diff hist +128 Introduction No edit summary
- 09:0509:05, 23 October 2012 diff hist +195 N Introduction Created page with "Assuming you have a list of bamfiles in in file: 'list.txt' and you want the genotype likelihoods for position 12500000 on chromosome 8. <pre> ./angsd -bam list.txt -GL 1 -r ..."
20 October 2012
- 23:4723:47, 20 October 2012 diff hist +101 Installation →Download
- 05:2105:21, 20 October 2012 diff hist +9 Installation →Download
- 05:2005:20, 20 October 2012 diff hist 0 Installation →Download
- 05:1705:17, 20 October 2012 diff hist +185 Installation →Download
- 04:1804:18, 20 October 2012 diff hist +118 Bugs No edit summary
18 October 2012
- 04:0404:04, 18 October 2012 diff hist +44 Bugs No edit summary
- 04:0004:00, 18 October 2012 diff hist +38 Bugs No edit summary
- 03:0403:04, 18 October 2012 diff hist +302 Bugs No edit summary
17 October 2012
- 23:4123:41, 17 October 2012 diff hist +62 SFS Estimation →Example
- 23:3923:39, 17 October 2012 diff hist −13 Error estimation →Error estimation from polymorphic sites
- 23:3823:38, 17 October 2012 diff hist +107 Change log →Version notes
- 23:3523:35, 17 October 2012 diff hist +1 Installation →Unix
- 23:3523:35, 17 October 2012 diff hist +1 Installation →Download
- 23:3423:34, 17 October 2012 diff hist +1 ANGSD No edit summary
- 22:0422:04, 17 October 2012 diff hist −161 ANGSD →About
- 22:0122:01, 17 October 2012 diff hist −1 ANGSD →About
- 22:0122:01, 17 October 2012 diff hist +389 ANGSD →About
16 October 2012
- 17:5017:50, 16 October 2012 diff hist +1 Bugs No edit summary