ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Thorfinn
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22 March 2013
- 14:5014:50, 22 March 2013 diff hist +125 Change log No edit summary
- 14:4814:48, 22 March 2013 diff hist −127 m MediaWiki:Sitenotice No edit summary
- 14:4714:47, 22 March 2013 diff hist −2 Installation No edit summary
- 14:4714:47, 22 March 2013 diff hist 0 ANGSD No edit summary
19 March 2013
- 13:3013:30, 19 March 2013 diff hist −135 Allele Counts No edit summary
- 13:3013:30, 19 March 2013 diff hist +17 MediaWiki:Sitenotice No edit summary
- 13:2913:29, 19 March 2013 diff hist +100 MediaWiki:Sitenotice No edit summary
- 13:2813:28, 19 March 2013 diff hist +10 MediaWiki:Sitenotice No edit summary
18 March 2013
- 19:3819:38, 18 March 2013 diff hist +32 Allele Counts No edit summary
- 19:3819:38, 18 March 2013 diff hist +104 Allele Counts No edit summary
- 19:3719:37, 18 March 2013 diff hist +107 Filters No edit summary
15 March 2013
- 21:1121:11, 15 March 2013 diff hist +1 Filters →Warning
- 21:1021:10, 15 March 2013 diff hist +15 Filters →Warning
- 21:0921:09, 15 March 2013 diff hist +599 Filters No edit summary
- 19:5019:50, 15 March 2013 diff hist 0 ANGSD No edit summary
- 19:4919:49, 15 March 2013 diff hist +44 Change log →Version notes
- 19:4919:49, 15 March 2013 diff hist +1 Installation No edit summary
- 19:3219:32, 15 March 2013 diff hist −1 Installation No edit summary
- 17:4717:47, 15 March 2013 diff hist +1 Installation →Unix
- 17:4617:46, 15 March 2013 diff hist +1 Installation No edit summary
- 17:4617:46, 15 March 2013 diff hist +1 ANGSD No edit summary
7 March 2013
- 14:1214:12, 7 March 2013 diff hist +52 Input →optional arguments
- 11:2911:29, 7 March 2013 diff hist +114 Change log No edit summary
- 11:2811:28, 7 March 2013 diff hist +2,321 Change log No edit summary
- 11:2311:23, 7 March 2013 diff hist 0 Installation →Install
- 11:2211:22, 7 March 2013 diff hist −1 Installation No edit summary
- 11:2111:21, 7 March 2013 diff hist 0 ANGSD No edit summary
14 February 2013
- 16:3116:31, 14 February 2013 diff hist +5 Filters No edit summary
- 16:3116:31, 14 February 2013 diff hist +30 Filters No edit summary
8 February 2013
- 13:3913:39, 8 February 2013 diff hist +1 Depth →Depth
1 February 2013
- 14:3314:33, 1 February 2013 diff hist +43 Bugs No edit summary
- 14:3214:32, 1 February 2013 diff hist +69 Bugs No edit summary
31 January 2013
- 13:1813:18, 31 January 2013 diff hist −1 Thetas,Tajima,Neutrality tests No edit summary
22 January 2013
- 01:4801:48, 22 January 2013 diff hist +47 Allele Counts →options
21 January 2013
- 16:3616:36, 21 January 2013 diff hist +76 Major Minor No edit summary
- 16:0116:01, 21 January 2013 diff hist 0 Major Minor →arguments
- 16:0116:01, 21 January 2013 diff hist +204 Major Minor →arguments
- 15:5515:55, 21 January 2013 diff hist −2 Major Minor No edit summary
- 15:5515:55, 21 January 2013 diff hist +69 Major Minor →Inferring Major and Minor alleles
- 15:5115:51, 21 January 2013 diff hist +157 Major Minor No edit summary
- 15:4915:49, 21 January 2013 diff hist +2 Allele Frequencies No edit summary
- 15:4815:48, 21 January 2013 diff hist −1 Allele Frequencies No edit summary
- 15:4815:48, 21 January 2013 diff hist +18 Allele Frequencies No edit summary
- 15:4715:47, 21 January 2013 diff hist +140 Allele Frequencies No edit summary
- 15:4515:45, 21 January 2013 diff hist +2 Allele Frequencies No edit summary
- 15:4515:45, 21 January 2013 diff hist +95 Allele Frequencies No edit summary
- 15:4015:40, 21 January 2013 diff hist +55 Allele Frequencies No edit summary
- 15:3915:39, 21 January 2013 diff hist +38 Allele Frequencies No edit summary
16 January 2013
- 19:3019:30, 16 January 2013 diff hist +70 Genotype calling →options
- 19:2919:29, 16 January 2013 diff hist +1 Installation No edit summary
- 19:2919:29, 16 January 2013 diff hist −4 ANGSD No edit summary
4 January 2013
- 14:5014:50, 4 January 2013 diff hist −14 Filters →Major minor
3 January 2013
- 02:5002:50, 3 January 2013 diff hist +61 N Thorfinn Created page with "Check keepsites in -filter check leak in get3likes Thorfinn"
28 December 2012
- 20:0820:08, 28 December 2012 diff hist +133 Bugs No edit summary
- 20:0520:05, 28 December 2012 diff hist +39 Bugs No edit summary
19 December 2012
- 21:3021:30, 19 December 2012 diff hist +155 Filters →Selected Sites
- 21:2821:28, 19 December 2012 diff hist −5 Filters →Selected Sites
- 21:2821:28, 19 December 2012 diff hist +310 Filters →Selected Sites
- 21:1021:10, 19 December 2012 diff hist +21 SFS Estimation No edit summary
- 21:0421:04, 19 December 2012 diff hist +214 SFS Estimation No edit summary
18 December 2012
- 15:2615:26, 18 December 2012 diff hist +18 MediaWiki:Sidebar No edit summary
- 15:2315:23, 18 December 2012 diff hist 0 MediaWiki:Sidebar No edit summary
- 15:2315:23, 18 December 2012 diff hist +5 MediaWiki:Sidebar No edit summary
- 15:2215:22, 18 December 2012 diff hist 0 MediaWiki:Sidebar No edit summary
- 15:1815:18, 18 December 2012 diff hist +7 MediaWiki:Sidebar No edit summary
- 15:1715:17, 18 December 2012 diff hist +8 MediaWiki:Sidebar No edit summary
- 03:3203:32, 18 December 2012 diff hist +445 N Memory Usage Created page with "For large sample sizes and if many threads are allocated to the program the memory usage can become severe. The filewriting has to be done in the correct order, and if some g..." current
- 03:1003:10, 18 December 2012 diff hist +131 Thetas,Tajima,Neutrality tests →.thetas.gz.pestPG
- 03:0903:09, 18 December 2012 diff hist −1 Thetas,Tajima,Neutrality tests →.thetas.gz.pestPG
- 03:0803:08, 18 December 2012 diff hist +2,618 Thetas,Tajima,Neutrality tests →Example Output
- 03:0703:07, 18 December 2012 diff hist +108 Thetas,Tajima,Neutrality tests →Example Output
- 03:0003:00, 18 December 2012 diff hist +6 Thetas,Tajima,Neutrality tests No edit summary
- 03:0003:00, 18 December 2012 diff hist +69 Thetas,Tajima,Neutrality tests →Example Output
- 02:5502:55, 18 December 2012 diff hist −2 Thetas,Tajima,Neutrality tests →Example Output
- 02:5502:55, 18 December 2012 diff hist +1,668 Thetas,Tajima,Neutrality tests No edit summary
- 02:5302:53, 18 December 2012 diff hist +2 Thetas,Tajima,Neutrality tests No edit summary
- 02:5302:53, 18 December 2012 diff hist +508 Thetas,Tajima,Neutrality tests No edit summary
- 02:4402:44, 18 December 2012 diff hist +245 Thetas,Tajima,Neutrality tests No edit summary
- 02:4002:40, 18 December 2012 diff hist +59 N Thetas,Tajima,Neutrality tests Created page with "Angsd can estimate the Tajimas D and other neutrality test."
16 December 2012
- 21:3221:32, 16 December 2012 diff hist −2 Installation No edit summary
- 21:3021:30, 16 December 2012 diff hist 0 ANGSD No edit summary
11 December 2012
- 22:1022:10, 11 December 2012 diff hist +130 Bugs No edit summary
- 22:0622:06, 11 December 2012 diff hist +24 Bugs No edit summary
- 18:1318:13, 11 December 2012 diff hist +23 Filters →Number of non missing individuals
5 December 2012
- 23:3023:30, 5 December 2012 diff hist +4 Bugs →Limitation
- 23:3023:30, 5 December 2012 diff hist +130 Bugs →Limitation
- 23:0823:08, 5 December 2012 diff hist +34 Bugs No edit summary
- 19:2219:22, 5 December 2012 diff hist +90 Allele Frequencies →.mafs
- 19:2019:20, 5 December 2012 diff hist +46 Bugs No edit summary
- 18:5918:59, 5 December 2012 diff hist +2 Allele Frequencies →.mafs
- 18:5918:59, 5 December 2012 diff hist +462 Allele Frequencies →.mafs
4 December 2012
- 18:0218:02, 4 December 2012 diff hist +103 Bugs No edit summary
3 December 2012
- 14:2014:20, 3 December 2012 diff hist −76 Genotype Likelihoods →output genotype likelihoods
- 11:5611:56, 3 December 2012 diff hist +130 Genotype Likelihoods →output genotype likelihoods
30 November 2012
- 19:4619:46, 30 November 2012 diff hist +143 Bugs No edit summary
- 19:4119:41, 30 November 2012 diff hist +49 Bugs No edit summary
28 November 2012
- 12:4012:40, 28 November 2012 diff hist −43 Installation No edit summary
- 12:3012:30, 28 November 2012 diff hist +36 Bugs No edit summary
18 November 2012
- 00:1500:15, 18 November 2012 diff hist +24 Bugs No edit summary
16 November 2012
- 17:1917:19, 16 November 2012 diff hist +87 Bugs No edit summary