ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Thorfinn
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16 July 2013
- 17:4917:49, 16 July 2013 diff hist +24 MediaWiki:Sidebar No edit summary
- 17:4817:48, 16 July 2013 diff hist +7 NGSadmix No edit summary
- 17:4717:47, 16 July 2013 diff hist −4 NGSadmix No edit summary
- 17:4717:47, 16 July 2013 diff hist −1 NGSadmix No edit summary
- 17:4617:46, 16 July 2013 diff hist +19 NGSadmix No edit summary
- 17:4517:45, 16 July 2013 diff hist +2 NGSadmix No edit summary
- 17:4517:45, 16 July 2013 diff hist +62 N NGSadmix Created page with "NGSadmix has it's very own webpage. [wwww.popgen.dk/software]"
4 July 2013
- 14:1414:14, 4 July 2013 diff hist +34 Bugs →Bugs
2 July 2013
- 13:5913:59, 2 July 2013 diff hist +97 HWE and Inbreeding estimates →HWE and Inbreeding estimates
30 June 2013
- 17:3017:30, 30 June 2013 diff hist −20 Genotype likelihoods from alignments new →Brief Overview
- 17:3017:30, 30 June 2013 diff hist +485 Genotype likelihoods from alignments new No edit summary
- 17:2417:24, 30 June 2013 diff hist 0 Genotype likelihoods from alignments new No edit summary
- 17:2417:24, 30 June 2013 diff hist +3 Genotype likelihoods from alignments new No edit summary
- 17:2417:24, 30 June 2013 diff hist +193 Genotype likelihoods from alignments new No edit summary
- 17:1617:16, 30 June 2013 diff hist +4,458 N Genotype likelihoods from alignments new Created page with "=Genotype likelihoods from alignments= <classdiagram> // [input|bam files;SOAP files{bg:orange}]->[sequence data] [sequence data]->[genotype likelihoods|SAMtools;GATK;SOAPsnp..."
- 17:1517:15, 30 June 2013 diff hist −79 ANGSD No edit summary
29 June 2013
- 12:0212:02, 29 June 2013 diff hist +70 Association →Output
- 11:5811:58, 29 June 2013 diff hist −1 Association →Output
- 11:5811:58, 29 June 2013 diff hist 0 Association →Output
- 11:5811:58, 29 June 2013 diff hist +6 Association →Output
- 11:5011:50, 29 June 2013 diff hist +8 Association →Citations
- 11:4911:49, 29 June 2013 diff hist +52 Association →Citations
- 11:4611:46, 29 June 2013 diff hist +12 Association No edit summary
- 11:4311:43, 29 June 2013 diff hist +154 Gatk No edit summary current
- 11:4211:42, 29 June 2013 diff hist +395 Gatk No edit summary
- 11:4011:40, 29 June 2013 diff hist +1 Citing angsd No edit summary
- 11:3811:38, 29 June 2013 diff hist +6 Li2011 No edit summary current
- 11:3811:38, 29 June 2013 diff hist 0 Citing angsd →Genotype likelihoods
- 11:3711:37, 29 June 2013 diff hist +587 N Li2011 Created page with "A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data. Bioinformatics, 27, 21:298..."
- 11:3111:31, 29 June 2013 diff hist +337 Nielsen2012 No edit summary current
- 11:2711:27, 29 June 2013 diff hist 0 Skotte2012 No edit summary current
- 11:1111:11, 29 June 2013 diff hist 0 Association →Output
- 11:1111:11, 29 June 2013 diff hist −62 Association →Output
- 11:0611:06, 29 June 2013 diff hist +98 Association →Output
- 11:0611:06, 29 June 2013 diff hist +41 N Maf Redirected page to Allele Frequency estimation current
- 11:0111:01, 29 June 2013 diff hist +1 Association →Output
- 11:0111:01, 29 June 2013 diff hist +14 Association →Output
- 11:0011:00, 29 June 2013 diff hist +93 Association →Output
- 10:5710:57, 29 June 2013 diff hist +47 N MajorMinor Redirected page to Inferring Major and Minor alleles current
- 10:5310:53, 29 June 2013 diff hist −7 Association →Output
- 10:4710:47, 29 June 2013 diff hist −17 Association →Output
- 10:3810:38, 29 June 2013 diff hist −37 Association →Output
- 10:3710:37, 29 June 2013 diff hist +26 Association →Output
- 10:3610:36, 29 June 2013 diff hist +14 Association →Output
- 10:3410:34, 29 June 2013 diff hist +3 Association →Output
- 10:3410:34, 29 June 2013 diff hist +64 Association →Output
- 10:3310:33, 29 June 2013 diff hist +3 Association →Output
- 10:3210:32, 29 June 2013 diff hist +105 Association →Output
- 10:2910:29, 29 June 2013 diff hist +20 Association →Output
- 10:2710:27, 29 June 2013 diff hist +42 Association →Output
- 10:2510:25, 29 June 2013 diff hist +1 Association →Output
- 10:2510:25, 29 June 2013 diff hist 0 Association →Output
- 10:2410:24, 29 June 2013 diff hist +85 Association →Output
- 10:2210:22, 29 June 2013 diff hist +42 Association →Output
- 10:2010:20, 29 June 2013 diff hist −2 Association →Output
- 10:2010:20, 29 June 2013 diff hist +96 Association →Output
- 10:1910:19, 29 June 2013 diff hist −20 Association →Output
- 10:1910:19, 29 June 2013 diff hist −27 Association →Output
- 10:0810:08, 29 June 2013 diff hist +10 Association →Dependency Chain
- 10:0810:08, 29 June 2013 diff hist 0 Association →output
- 10:0610:06, 29 June 2013 diff hist +1 Association No edit summary
- 10:0510:05, 29 June 2013 diff hist +17 Association No edit summary
- 10:0210:02, 29 June 2013 diff hist +602 Association No edit summary
28 June 2013
- 17:3017:30, 28 June 2013 diff hist −1 Association →Score statistic
- 17:2917:29, 28 June 2013 diff hist −1 Association →Score statistic
- 17:2817:28, 28 June 2013 diff hist −4 Association →Score statistic
- 17:2817:28, 28 June 2013 diff hist +4 Association →Case control association using allele frequencies
- 17:2717:27, 28 June 2013 diff hist +4 Association →Score statistic
- 17:2717:27, 28 June 2013 diff hist +4 Association →Score statistic
- 17:2717:27, 28 June 2013 diff hist +2 Association →Score statistic
- 17:2617:26, 28 June 2013 diff hist +2 Association →Score statistic
- 17:2617:26, 28 June 2013 diff hist +6 Association No edit summary
- 17:2517:25, 28 June 2013 diff hist 0 Association →Score statistic
- 17:2517:25, 28 June 2013 diff hist −84 Association →Score statistic
- 17:2317:23, 28 June 2013 diff hist −121 Association →Score statistic
- 17:2317:23, 28 June 2013 diff hist +92 Association →Dependency Chain
- 17:2017:20, 28 June 2013 diff hist −81 Association →Score statistic
- 17:1817:18, 28 June 2013 diff hist 0 Association →Dependency Chain
- 17:1817:18, 28 June 2013 diff hist −1 Association →Dependency Chain
- 17:1717:17, 28 June 2013 diff hist −10 Association →Dependency Chain
- 17:1717:17, 28 June 2013 diff hist +499 Association →Example
- 17:1517:15, 28 June 2013 diff hist +2 Association →Dependency Chain
- 17:1417:14, 28 June 2013 diff hist −6 Association →Dependency Chain
- 17:1417:14, 28 June 2013 diff hist +89 Association →Dependency Chain
- 17:1317:13, 28 June 2013 diff hist +43 Association →Dependency Chain
- 17:1217:12, 28 June 2013 diff hist +63 Association →Dependency Chain
- 17:1017:10, 28 June 2013 diff hist +2 Association →Dependency Chain
- 17:1017:10, 28 June 2013 diff hist +60 Association →Dependency Chain
- 17:0917:09, 28 June 2013 diff hist +212 Association →Case control association using allele frequencies
- 17:0417:04, 28 June 2013 diff hist −13 Genotype calling No edit summary
- 17:0117:01, 28 June 2013 diff hist +30 N Template:Cleanup Created page with "This page should be cleaned up" current
- 17:0117:01, 28 June 2013 diff hist +1 Genotype calling No edit summary
- 16:5816:58, 28 June 2013 diff hist +13 Genotype calling No edit summary
- 16:5716:57, 28 June 2013 diff hist −9 Association →Score statistic
- 16:5716:57, 28 June 2013 diff hist +21 Association →Score statistic
- 16:4716:47, 28 June 2013 diff hist +1 Association No edit summary
- 16:4516:45, 28 June 2013 diff hist 0 Association →Case control association using allele frequencies
- 16:4516:45, 28 June 2013 diff hist +8 Association →Case control association using allele frequencies
- 16:4416:44, 28 June 2013 diff hist +4 Association →Case control association using allele frequencies
- 16:4416:44, 28 June 2013 diff hist +2 Association →Case control association using allele frequencies