ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Thorfinn
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12 August 2014
- 12:0612:06, 12 August 2014 diff hist +50 SFS Estimation →How to plot
- 12:0512:05, 12 August 2014 diff hist +33 Glcomparison No edit summary
- 12:0412:04, 12 August 2014 diff hist +550 Glcomparison No edit summary
- 12:0312:03, 12 August 2014 diff hist +420 Glcomparison No edit summary
- 11:5711:57, 12 August 2014 diff hist +1,452 Glcomparison No edit summary
- 11:5411:54, 12 August 2014 diff hist −63 Glcomparison No edit summary
- 11:5311:53, 12 August 2014 diff hist +1,004 N Glcomparison Created page with "For some analysis the choice of GL model will make a huge impact, this is shown in the example where we estimate the sfs using '''-GL 1''' and '''-GL 2''', for two list of BAM..."
- 11:3711:37, 12 August 2014 diff hist 0 N File:Glcomparison.png No edit summary current
1 August 2014
- 12:0212:02, 1 August 2014 diff hist +64 Contamination No edit summary
- 11:5911:59, 1 August 2014 diff hist +12 Contamination No edit summary
- 11:5811:58, 1 August 2014 diff hist +117 Contamination No edit summary
- 11:5711:57, 1 August 2014 diff hist +9 Contamination No edit summary
31 July 2014
- 11:5511:55, 31 July 2014 diff hist −14 Misc example No edit summary current
- 11:5511:55, 31 July 2014 diff hist +18 MsToGlf →Two populations
- 11:5411:54, 31 July 2014 diff hist +25 MsToGlf →Two populations
- 11:5411:54, 31 July 2014 diff hist +21 MsToGlf →Standard neutral model
22 July 2014
- 21:0421:04, 22 July 2014 diff hist +7 Quick Start →Ancestral fasta file for hg19
- 21:0221:02, 22 July 2014 diff hist +3 Quick Start →Ancestral fasta file for hg19
- 20:4920:49, 22 July 2014 diff hist +163 Quick Start →Ancestral fasta file for hg19
20 July 2014
- 09:5809:58, 20 July 2014 diff hist +61 Change log No edit summary
- 09:5509:55, 20 July 2014 diff hist 0 Installation →Unix
- 09:5509:55, 20 July 2014 diff hist 0 Installation No edit summary
- 09:5509:55, 20 July 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
17 July 2014
- 19:5319:53, 17 July 2014 diff hist +49 Bugs No edit summary
11 July 2014
- 09:1609:16, 11 July 2014 diff hist +47 N Supersim Created page with "Small program to simulate genotype likelihoods."
3 July 2014
- 13:5813:58, 3 July 2014 diff hist +89 RealSFS →Brief overview
- 09:4109:41, 3 July 2014 diff hist +83 Installation →Download
- 09:4009:40, 3 July 2014 diff hist +60 ANGSD No edit summary
- 09:3909:39, 3 July 2014 diff hist −31 MediaWiki:Sitenotice No edit summary
- 09:3709:37, 3 July 2014 diff hist +31 MediaWiki:Sitenotice No edit summary
30 June 2014
- 14:1514:15, 30 June 2014 diff hist +4 Thetas,Tajima,Neutrality tests →Step 3a: Estimate Tajimas D and other statistics
- 14:1514:15, 30 June 2014 diff hist +2 Thetas,Tajima,Neutrality tests →Step 1: Finding a 'global estimate' of the SFS
- 14:1514:15, 30 June 2014 diff hist +8 Thetas,Tajima,Neutrality tests →Full command list for below examples
- 14:1414:14, 30 June 2014 diff hist +114 Quick Start →Estimating thetas, neutrality test statistics
- 14:1214:12, 30 June 2014 diff hist +48 Quick Start →Finding the SFS
- 14:1114:11, 30 June 2014 diff hist −16 Quick Start →Ancestral fasta file for hg19
- 14:0114:01, 30 June 2014 diff hist −2 Thetas,Tajima,Neutrality tests →Step 2: Calculate the thetas for each site
- 14:0014:00, 30 June 2014 diff hist −2 Thetas,Tajima,Neutrality tests →Step 1: Finding a 'global estimate' of the SFS
- 14:0014:00, 30 June 2014 diff hist +783 Thetas,Tajima,Neutrality tests →Example
- 13:5813:58, 30 June 2014 diff hist −567 Thetas,Tajima,Neutrality tests →Full command list for above examples
- 13:5813:58, 30 June 2014 diff hist +1 Thetas,Tajima,Neutrality tests →=Step 3b: Sliding Window example
- 13:5813:58, 30 June 2014 diff hist +10 Thetas,Tajima,Neutrality tests →Sliding Window example
- 13:5813:58, 30 June 2014 diff hist +1 Thetas,Tajima,Neutrality tests →Step 3: Estimate Tajimas D and other statistics
- 13:5713:57, 30 June 2014 diff hist +77 Thetas,Tajima,Neutrality tests →Full command list for above examples
- 13:5613:56, 30 June 2014 diff hist +433 Thetas,Tajima,Neutrality tests →Full command list for above examples
- 13:5413:54, 30 June 2014 diff hist +57 Thetas,Tajima,Neutrality tests →Example Output
- 13:5313:53, 30 June 2014 diff hist −6 Thetas,Tajima,Neutrality tests →Output of the .thetas.gz file
- 13:5313:53, 30 June 2014 diff hist +7 Thetas,Tajima,Neutrality tests →Estimate Tajimas D and other statistics
- 13:5213:52, 30 June 2014 diff hist −1 Thetas,Tajima,Neutrality tests →Estimate Tajimas D and other statistics
- 13:5213:52, 30 June 2014 diff hist +1 Thetas,Tajima,Neutrality tests →Step2: Calculate the thetas for each site
- 13:5213:52, 30 June 2014 diff hist −2 Thetas,Tajima,Neutrality tests →Step 1: Finding a 'global estimate' of the SFS
- 13:5113:51, 30 June 2014 diff hist +7 Thetas,Tajima,Neutrality tests →Calculate the thetas for each site
- 13:5113:51, 30 June 2014 diff hist +4,293 Thetas,Tajima,Neutrality tests →Estimate Tajimas D and other statistics
- 13:4813:48, 30 June 2014 diff hist +26 Thetas,Tajima,Neutrality tests →Output of the .thetas.gz file
- 13:4513:45, 30 June 2014 diff hist +2 Thetas,Tajima,Neutrality tests →Output of the .thetas.gz file
- 13:4413:44, 30 June 2014 diff hist +6 Thetas,Tajima,Neutrality tests →Step 1: Finding a 'global estimate' of the SFS
- 13:4313:43, 30 June 2014 diff hist +1 Thetas,Tajima,Neutrality tests →Step 1: Finding a 'global estimate' of the SFS=
- 13:4313:43, 30 June 2014 diff hist +4 Thetas,Tajima,Neutrality tests →Example
- 13:4313:43, 30 June 2014 diff hist +48 Thetas,Tajima,Neutrality tests →Example
- 13:4113:41, 30 June 2014 diff hist −3 Thetas,Tajima,Neutrality tests →Output of the .thetas.gz file
- 13:4013:40, 30 June 2014 diff hist −21 Thetas,Tajima,Neutrality tests →Example
- 13:4013:40, 30 June 2014 diff hist +103 Thetas,Tajima,Neutrality tests →Example
- 13:3813:38, 30 June 2014 diff hist +1,060 Thetas,Tajima,Neutrality tests →Example
- 13:3613:36, 30 June 2014 diff hist +44 N Tajima Thorfinn moved page Tajima to Thetas,Tajima,Neutrality tests current
- 13:3613:36, 30 June 2014 diff hist 0 m Thetas,Tajima,Neutrality tests Thorfinn moved page Tajima to Thetas,Tajima,Neutrality tests
- 13:3313:33, 30 June 2014 diff hist −2 Thetas,Tajima,Neutrality tests →Sliding Window example
- 13:3213:32, 30 June 2014 diff hist +33 Quick Start →Finding the SFS
- 13:3113:31, 30 June 2014 diff hist +60 Quick Start →Finding the SFS
- 13:2913:29, 30 June 2014 diff hist −1 2d SFS Estimation No edit summary
- 13:2813:28, 30 June 2014 diff hist −4 2d SFS Estimation →Example
- 13:2713:27, 30 June 2014 diff hist +10 SFS Estimation →How to plot
- 13:2713:27, 30 June 2014 diff hist −1 SFS Estimation →Posterior of the per-site distributions of the sample allele frequency
- 13:2613:26, 30 June 2014 diff hist +5 SFS Estimation →Interpretation of the output file
- 13:2613:26, 30 June 2014 diff hist +5 SFS Estimation →Example
- 13:2613:26, 30 June 2014 diff hist −1 SFS Estimation →Options
- 13:2513:25, 30 June 2014 diff hist −1 SFS Estimation →Brief Overview
- 13:2513:25, 30 June 2014 diff hist −2 SFS Estimation →Brief Overview
- 13:2413:24, 30 June 2014 diff hist −3 MsToGlf →Two populations
- 13:2413:24, 30 June 2014 diff hist +5 MsToGlf →Two populations
- 13:2313:23, 30 June 2014 diff hist +5 RealSFSmethod →Likelihood of the SFS current
- 13:2313:23, 30 June 2014 diff hist +5 Fst PCA No edit summary
- 13:2213:22, 30 June 2014 diff hist +5 RealSFS →1d SFS
- 13:2113:21, 30 June 2014 diff hist −3 RealSFS →2dsfs
- 13:2113:21, 30 June 2014 diff hist −2 RealSFS →1d SFS
- 13:2113:21, 30 June 2014 diff hist −2 RealSFS No edit summary
- 13:2013:20, 30 June 2014 diff hist +5 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 13:1913:19, 30 June 2014 diff hist −1 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 13:1913:19, 30 June 2014 diff hist +516 Thetas,Tajima,Neutrality tests →.thetas.gz.pestPG
- 13:1813:18, 30 June 2014 diff hist 0 RealSFS No edit summary
- 13:1813:18, 30 June 2014 diff hist −2 MediaWiki:Sidebar No edit summary
- 13:1513:15, 30 June 2014 diff hist +4 Thetas,Tajima,Neutrality tests →Example
- 13:1313:13, 30 June 2014 diff hist −1 SFS Estimation →Folded spectra
- 13:1213:12, 30 June 2014 diff hist +93 Quick Start →Finding the SFS
- 13:1113:11, 30 June 2014 diff hist −1 SFS Estimation No edit summary
- 13:0713:07, 30 June 2014 diff hist 0 N File:SmallFolded.png No edit summary current
- 13:0713:07, 30 June 2014 diff hist +3 SFS Estimation →Folded spectra
- 13:0713:07, 30 June 2014 diff hist +85 SFS Estimation →Folded spectra
- 13:0213:02, 30 June 2014 diff hist +5 SFS Estimation →Folded spectra
- 13:0213:02, 30 June 2014 diff hist +17 SFS Estimation →Folded spectra
- 13:0013:00, 30 June 2014 diff hist 0 MediaWiki:Sidebar No edit summary
- 12:5912:59, 30 June 2014 diff hist 0 N File:SfsSmallFine.png No edit summary current
- 12:5912:59, 30 June 2014 diff hist +12 SFS Estimation →How to plot
- 12:4512:45, 30 June 2014 diff hist −189 SFS Estimation →NB
- 12:4412:44, 30 June 2014 diff hist −9 SFS Estimation →Interpretation of the emOptim2 output file
- 12:4412:44, 30 June 2014 diff hist +123 SFS Estimation →Example
- 12:4312:43, 30 June 2014 diff hist 0 N File:SfsSmall.png No edit summary current
- 12:4212:42, 30 June 2014 diff hist +28 SFS Estimation →Example
- 12:3312:33, 30 June 2014 diff hist −1 SFS Estimation →Example
- 12:3212:32, 30 June 2014 diff hist −3 SFS Estimation →Example
- 12:3212:32, 30 June 2014 diff hist −334 SFS Estimation →Example
- 12:1212:12, 30 June 2014 diff hist −1 SFS Estimation →Example
- 12:1212:12, 30 June 2014 diff hist +69 SFS Estimation →Example
- 12:0512:05, 30 June 2014 diff hist +91 Thetas,Tajima,Neutrality tests →Example
- 12:0312:03, 30 June 2014 diff hist +600 Thetas,Tajima,Neutrality tests →Example
- 12:0312:03, 30 June 2014 diff hist −1 Thetas,Tajima,Neutrality tests →Example
- 12:0212:02, 30 June 2014 diff hist +20 Quick Start →Generate Beagle Likelihood files
- 11:5411:54, 30 June 2014 diff hist 0 Installation No edit summary
- 11:5311:53, 30 June 2014 diff hist 0 Installation No edit summary
- 11:5311:53, 30 June 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 11:5311:53, 30 June 2014 diff hist +60 Change log →Latest
- 11:3811:38, 30 June 2014 diff hist −16 Thetas,Tajima,Neutrality tests →Example
- 11:3811:38, 30 June 2014 diff hist +103 Thetas,Tajima,Neutrality tests →Example
- 11:3711:37, 30 June 2014 diff hist +60 Quick Start →Ancestral fasta file for hg19
- 11:0611:06, 30 June 2014 diff hist +19 Quick Start →Ancestral fasta file for hg19
- 11:0511:05, 30 June 2014 diff hist +209 Quick Start →Ancestral fasta file for hg19
- 11:0111:01, 30 June 2014 diff hist +74 Quick Start →Download and prepare
- 10:5910:59, 30 June 2014 diff hist 0 Thetas,Tajima,Neutrality tests No edit summary
28 June 2014
- 21:0921:09, 28 June 2014 diff hist +13 Contamination No edit summary
- 10:0510:05, 28 June 2014 diff hist −6 Contamination →Interpretation of outputfiles
- 10:0310:03, 28 June 2014 diff hist 0 Contamination →method
27 June 2014
- 16:4716:47, 27 June 2014 diff hist +8 Contamination No edit summary
- 15:4615:46, 27 June 2014 diff hist 0 Contamination No edit summary
- 15:4415:44, 27 June 2014 diff hist +15 SFS Estimation →Example
- 15:2415:24, 27 June 2014 diff hist +264 SFS Estimation →Example
- 15:1915:19, 27 June 2014 diff hist 0 RealSFS No edit summary
- 15:1815:18, 27 June 2014 diff hist −3 RealSFS No edit summary
- 15:1815:18, 27 June 2014 diff hist +5 RealSFS No edit summary
- 15:1815:18, 27 June 2014 diff hist +127 RealSFS No edit summary
- 15:1715:17, 27 June 2014 diff hist +21 N EmOptim2 Thorfinn moved page EmOptim2 to RealSFS: This is what the program is called now current
- 15:1715:17, 27 June 2014 diff hist 0 m RealSFS Thorfinn moved page EmOptim2 to RealSFS: This is what the program is called now
- 15:1415:14, 27 June 2014 diff hist −49 SFS Estimation No edit summary
- 15:0815:08, 27 June 2014 diff hist +84 Change log →Latest
- 15:0815:08, 27 June 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 15:0715:07, 27 June 2014 diff hist 0 Installation No edit summary
- 15:0515:05, 27 June 2014 diff hist +281 Change log →Latest
- 14:3614:36, 27 June 2014 diff hist +156 Installation →Unix
- 13:2213:22, 27 June 2014 diff hist 0 Installation →Unix
- 13:0013:00, 27 June 2014 diff hist +140 Contamination →Output
- 12:5912:59, 27 June 2014 diff hist −83 Contamination →Output
- 12:5812:58, 27 June 2014 diff hist +259 Contamination No edit summary
- 12:5512:55, 27 June 2014 diff hist +13 Contamination No edit summary
- 12:4912:49, 27 June 2014 diff hist +1,601 Contamination No edit summary
- 12:4612:46, 27 June 2014 diff hist +69 Contamination No edit summary
- 11:5611:56, 27 June 2014 diff hist +377 Contamination No edit summary
- 11:5111:51, 27 June 2014 diff hist +219 Contamination No edit summary
- 11:4811:48, 27 June 2014 diff hist +119 Contamination No edit summary
26 June 2014
- 19:4119:41, 26 June 2014 diff hist +31 MediaWiki:Sidebar No edit summary
- 19:4019:40, 26 June 2014 diff hist +32 N Contamination Created page with "Angsd can estimate contamination"
- 00:4300:43, 26 June 2014 diff hist +93 Change log →Latest
24 June 2014
- 13:0513:05, 24 June 2014 diff hist +43 Change log No edit summary
23 June 2014
- 10:3810:38, 23 June 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 10:3810:38, 23 June 2014 diff hist 0 Installation No edit summary
- 10:0010:00, 23 June 2014 diff hist +319 Change log →Latest
20 June 2014
- 12:2012:20, 20 June 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 12:1812:18, 20 June 2014 diff hist 0 Installation No edit summary
- 12:1812:18, 20 June 2014 diff hist 0 Installation No edit summary
- 10:5710:57, 20 June 2014 diff hist +128 Change log No edit summary
19 June 2014
- 14:3614:36, 19 June 2014 diff hist +117 Fst PCA No edit summary
- 10:1110:11, 19 June 2014 diff hist +2 Thetas,Tajima,Neutrality tests →Sliding Window example
- 10:1110:11, 19 June 2014 diff hist +15 Thetas,Tajima,Neutrality tests →Sliding Window example
- 10:1010:10, 19 June 2014 diff hist +409 N ThetaStat Created page with "Small program to do window statistics. Here is what the program is supposed to do. <pre> 1) define a positionstart pS, as from the first position(on the genome) with data. 2..."
11 June 2014
- 18:3918:39, 11 June 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 18:3818:38, 11 June 2014 diff hist 0 Installation No edit summary
- 18:1218:12, 11 June 2014 diff hist +265 Change log →Latest
- 06:1606:16, 11 June 2014 diff hist −1 Sites →Internal representation
5 June 2014
- 21:4321:43, 5 June 2014 diff hist 0 Installation No edit summary
- 21:4221:42, 5 June 2014 diff hist +331 Change log No edit summary
- 21:3521:35, 5 June 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
3 June 2014
- 15:5115:51, 3 June 2014 diff hist +109 Change log →Latest
28 May 2014
- 18:1618:16, 28 May 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 18:1518:15, 28 May 2014 diff hist 0 Installation No edit summary
- 18:1518:15, 28 May 2014 diff hist +57 Change log →latest
- 18:1418:14, 28 May 2014 diff hist +4 Change log →0.589 to ?
22 May 2014
- 11:2311:23, 22 May 2014 diff hist −841 Input →Genotype Likelihood Files
- 10:1410:14, 22 May 2014 diff hist −62 Input →Genotype Probability Files
- 10:1210:12, 22 May 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 10:1210:12, 22 May 2014 diff hist 0 Installation No edit summary
- 10:0110:01, 22 May 2014 diff hist +136 Change log →0.589 to ?
21 May 2014
- 23:4723:47, 21 May 2014 diff hist +204 Input →Genotype Probability Files
14 May 2014
- 09:2809:28, 14 May 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 09:2709:27, 14 May 2014 diff hist 0 Installation No edit summary
- 09:2709:27, 14 May 2014 diff hist +80 Change log →0.589 to ?
12 May 2014
- 12:5412:54, 12 May 2014 diff hist +1 MediaWiki:Sitenotice No edit summary
- 12:5312:53, 12 May 2014 diff hist 0 Installation No edit summary
- 12:5312:53, 12 May 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 12:5212:52, 12 May 2014 diff hist +111 m MediaWiki:Sitenotice Reverted edits by Albrecht (talk) to last revision by Thorfinn
- 12:2312:23, 12 May 2014 diff hist +20 Change log →0.589 to ?
- 12:0012:00, 12 May 2014 diff hist −8 ANGSD →Operating system
7 May 2014
- 15:1915:19, 7 May 2014 diff hist +55 Change log →0.589 to ?
6 May 2014
- 16:5816:58, 6 May 2014 diff hist +128 Change log →0.589 to ?
10 April 2014
- 16:2916:29, 10 April 2014 diff hist +116 Change log →0.589 to ?
- 11:5811:58, 10 April 2014 diff hist +29 User:Thorfinn No edit summary
9 April 2014
- 23:5923:59, 9 April 2014 diff hist +6 RealSFS →2dsfs
- 23:5923:59, 9 April 2014 diff hist +6 2d SFS Estimation →Example
7 April 2014
- 13:0813:08, 7 April 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 11:4411:44, 7 April 2014 diff hist −362 User:Thorfinn No edit summary
- 11:3311:33, 7 April 2014 diff hist +71 Change log →0.589 to ?
- 11:1611:16, 7 April 2014 diff hist +305 Change log →0.589 to ?
- 10:3510:35, 7 April 2014 diff hist −68 User:Thorfinn →Code fix/cleanup
- 10:3510:35, 7 April 2014 diff hist +143 Change log No edit summary
- 10:3110:31, 7 April 2014 diff hist −3,136 User:Thorfinn →Code fix/cleanup
- 10:1810:18, 7 April 2014 diff hist −129 User:Thorfinn →Code fix/cleanup
5 April 2014
- 08:1708:17, 5 April 2014 diff hist +88 User:Thorfinn →Code fix/cleanup
4 April 2014
- 09:4509:45, 4 April 2014 diff hist +5 2d SFS Estimation →Example
3 April 2014
- 19:2019:20, 3 April 2014 diff hist +41 User:Thorfinn →Code fix/cleanup
2 April 2014
- 11:5411:54, 2 April 2014 diff hist +3,136 User:Thorfinn →Code fix/cleanup
- 09:2809:28, 2 April 2014 diff hist +68 User:Thorfinn →Code fix/cleanup
- 00:5900:59, 2 April 2014 diff hist +161 User:Thorfinn No edit summary
1 April 2014
- 20:4720:47, 1 April 2014 diff hist +57 User:Thorfinn →Code fix/cleanup
28 March 2014
- 08:3508:35, 28 March 2014 diff hist +58 User:Thorfinn →Code fix/cleanup
27 March 2014
- 22:3222:32, 27 March 2014 diff hist +41 User:Thorfinn No edit summary
26 March 2014
- 21:5021:50, 26 March 2014 diff hist +72 Change log →0.589 to ?
- 21:4821:48, 26 March 2014 diff hist +188 Change log →0.589 to ?
17 March 2014
- 12:2212:22, 17 March 2014 diff hist +76 Change log →<0.570 and <0.590
13 March 2014
- 16:1516:15, 13 March 2014 diff hist +1 2d SFS Estimation No edit summary
- 16:1416:14, 13 March 2014 diff hist −4 2d SFS Estimation →Example
- 16:1416:14, 13 March 2014 diff hist +65 2d SFS Estimation →Example
12 March 2014
- 23:4923:49, 12 March 2014 diff hist +19 MediaWiki:Sidebar No edit summary
- 23:4923:49, 12 March 2014 diff hist +20 MediaWiki:Sidebar No edit summary
- 23:4623:46, 12 March 2014 diff hist +54 SFS Estimation No edit summary
- 23:4423:44, 12 March 2014 diff hist +56 RealSFS No edit summary
- 23:4323:43, 12 March 2014 diff hist −2 RealSFS →Brief overview
- 23:4223:42, 12 March 2014 diff hist +712 RealSFS →Brief overview
- 23:3423:34, 12 March 2014 diff hist +11 RealSFS →Brief overview
- 23:3423:34, 12 March 2014 diff hist −9 RealSFS →2dsfs
- 23:3323:33, 12 March 2014 diff hist +32 RealSFS →2dsfs
- 23:1423:14, 12 March 2014 diff hist +247 RealSFS →Brief overview
- 23:0923:09, 12 March 2014 diff hist +111 RealSFS No edit summary
- 23:0823:08, 12 March 2014 diff hist −42 2d SFS Estimation →Example
- 23:0323:03, 12 March 2014 diff hist +42 2d SFS Estimation No edit summary
- 22:5622:56, 12 March 2014 diff hist +109 2d SFS Estimation →Example
- 22:5522:55, 12 March 2014 diff hist +119 2d SFS Estimation →Example
- 22:5322:53, 12 March 2014 diff hist +653 2d SFS Estimation →Example
- 22:4922:49, 12 March 2014 diff hist +176 2d SFS Estimation →Example
- 22:4722:47, 12 March 2014 diff hist +92 2d SFS Estimation →Example
- 22:4622:46, 12 March 2014 diff hist 0 2d SFS Estimation →Example
- 22:4622:46, 12 March 2014 diff hist +81 2d SFS Estimation →Example
- 22:4422:44, 12 March 2014 diff hist +179 2d SFS Estimation →Example
- 22:4322:43, 12 March 2014 diff hist +104 2d SFS Estimation →Example
- 22:3722:37, 12 March 2014 diff hist +217 2d SFS Estimation →Example
- 22:3522:35, 12 March 2014 diff hist +46 2d SFS Estimation →Example
- 22:3422:34, 12 March 2014 diff hist +6 2d SFS Estimation →Example
- 22:3422:34, 12 March 2014 diff hist +1 2d SFS Estimation →Example
- 22:3422:34, 12 March 2014 diff hist −2 2d SFS Estimation →Example
- 22:3322:33, 12 March 2014 diff hist +82 2d SFS Estimation →Example
- 22:3222:32, 12 March 2014 diff hist +184 2d SFS Estimation No edit summary
- 22:3022:30, 12 March 2014 diff hist +313 2d SFS Estimation No edit summary
- 22:2422:24, 12 March 2014 diff hist +1 2d SFS Estimation No edit summary
- 22:2422:24, 12 March 2014 diff hist +112 2d SFS Estimation No edit summary
- 22:0422:04, 12 March 2014 diff hist +18 N 2d SFS Estimation Created page with "=I'll put it here="
- 11:5111:51, 12 March 2014 diff hist 0 Installation No edit summary
- 11:3511:35, 12 March 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 11:3011:30, 12 March 2014 diff hist +215 Change log →<0.570 and <0.590
- 11:2911:29, 12 March 2014 diff hist −1,058 User:Thorfinn →Code fix/cleanup
- 11:0311:03, 12 March 2014 diff hist −43 User:Thorfinn →Code fix/cleanup
11 March 2014
- 23:2523:25, 11 March 2014 diff hist 0 Installation No edit summary
- 23:2523:25, 11 March 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 23:1523:15, 11 March 2014 diff hist +267 Change log →<0.570 and <0.590
10 March 2014
- 19:1719:17, 10 March 2014 diff hist +15 RealSFS →Brief overview
- 18:4518:45, 10 March 2014 diff hist +204 User:Thorfinn →Code fix/cleanup
- 16:4516:45, 10 March 2014 diff hist 0 Installation No edit summary
- 16:4416:44, 10 March 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 16:3616:36, 10 March 2014 diff hist +83 Change log →<0.570 and <0.590
- 14:3214:32, 10 March 2014 diff hist +50 Change log →<0.570 and <0.590
- 11:3311:33, 10 March 2014 diff hist 0 SFS Estimation →Example
- 11:2911:29, 10 March 2014 diff hist +24 SFS Estimation →Example
- 11:2911:29, 10 March 2014 diff hist +163 SFS Estimation →Example
- 10:5510:55, 10 March 2014 diff hist +85 Thetas,Tajima,Neutrality tests →Example
- 10:5410:54, 10 March 2014 diff hist +28 SFS Estimation →Brief Overview
- 10:5310:53, 10 March 2014 diff hist +79 RealSFS →Brief overview
7 March 2014
6 March 2014
- 15:2015:20, 6 March 2014 diff hist −19 Beagle input →Example
- 15:1915:19, 6 March 2014 diff hist 0 Beagle input →Example
- 15:1915:19, 6 March 2014 diff hist +19 Beagle input →Example
- 15:0815:08, 6 March 2014 diff hist 0 Sites →Details
- 13:5713:57, 6 March 2014 diff hist −63 SFS Estimation No edit summary
- 13:5613:56, 6 March 2014 diff hist +28 SFS Estimation →Options
- 12:0212:02, 6 March 2014 diff hist −4 SFS Estimation →Example
5 March 2014
- 21:1721:17, 5 March 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 19:3619:36, 5 March 2014 diff hist +420 User:Thorfinn →Code fix/cleanup
- 19:0519:05, 5 March 2014 diff hist +43 User:Thorfinn No edit summary
- 19:0219:02, 5 March 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 18:4918:49, 5 March 2014 diff hist +70 User:Thorfinn →Code fix/cleanup
- 18:4218:42, 5 March 2014 diff hist +64 User:Thorfinn →Code fix/cleanup
- 18:3918:39, 5 March 2014 diff hist +434 User:Thorfinn →Code fix/cleanup
- 18:1318:13, 5 March 2014 diff hist +45 User:Thorfinn No edit summary
- 17:5717:57, 5 March 2014 diff hist 0 Installation No edit summary
- 17:5717:57, 5 March 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 17:5017:50, 5 March 2014 diff hist +114 Change log No edit summary
- 17:4617:46, 5 March 2014 diff hist −234 Major Minor →Pre specified Major using the ancestral state
- 17:4517:45, 5 March 2014 diff hist −253 Major Minor →Pre specified Major using a reference
- 17:4517:45, 5 March 2014 diff hist −133 Major Minor No edit summary
- 17:3517:35, 5 March 2014 diff hist −117 Bugs →New stuff
- 17:3417:34, 5 March 2014 diff hist −104 User:Thorfinn →Code fix
- 17:2817:28, 5 March 2014 diff hist +39 User:Thorfinn →Addtional methods and functionality
- 17:2817:28, 5 March 2014 diff hist −40 User:Thorfinn →Code fix
- 17:2817:28, 5 March 2014 diff hist +39 User:Thorfinn →Addtional methods and functionality
- 17:2717:27, 5 March 2014 diff hist −157 User:Thorfinn →Code fix
- 17:2717:27, 5 March 2014 diff hist −91 User:Thorfinn →Code fix
- 17:2517:25, 5 March 2014 diff hist −50 User:Thorfinn →Code fix
- 17:2517:25, 5 March 2014 diff hist +168 Allele Frequencies →Allele Frequency estimation
- 17:0117:01, 5 March 2014 diff hist +89 Change log →<0.570 and <0.590
- 16:5516:55, 5 March 2014 diff hist 0 User:Thorfinn →addtional methods and functionality
- 16:5516:55, 5 March 2014 diff hist +19 User:Thorfinn →addtional method
- 16:5516:55, 5 March 2014 diff hist −70 User:Thorfinn →Wiki doc
- 16:5416:54, 5 March 2014 diff hist −188 User:Thorfinn →Code fix
- 16:2916:29, 5 March 2014 diff hist +89 Sites No edit summary
- 16:2416:24, 5 March 2014 diff hist −112 User:Thorfinn →Code fix
- 16:1516:15, 5 March 2014 diff hist +20 User:Thorfinn No edit summary
- 16:1416:14, 5 March 2014 diff hist −95 User:Thorfinn No edit summary
- 16:1216:12, 5 March 2014 diff hist +2 Change log No edit summary
- 16:1116:11, 5 March 2014 diff hist +3 Change log →<0.5 and <0.570
- 16:1116:11, 5 March 2014 diff hist +21 Change log →<0.5 and 0.57
- 16:0916:09, 5 March 2014 diff hist +23 Change log →ANGSD
- 16:0816:08, 5 March 2014 diff hist +69 Change log →ANGSD
- 15:3915:39, 5 March 2014 diff hist +1 User:Thorfinn No edit summary
- 14:1914:19, 5 March 2014 diff hist +69 User:Thorfinn No edit summary
- 14:1814:18, 5 March 2014 diff hist −1,208 User:Thorfinn →Anders changes to version 583
- 14:1814:18, 5 March 2014 diff hist +20 User:Thorfinn No edit summary
- 14:1714:17, 5 March 2014 diff hist −73 User:Thorfinn No edit summary
- 14:1614:16, 5 March 2014 diff hist +60 Change log →ANGSD
- 14:0714:07, 5 March 2014 diff hist +233 Change log No edit summary
- 14:0514:05, 5 March 2014 diff hist +21 Change log No edit summary
- 14:0414:04, 5 March 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 14:0414:04, 5 March 2014 diff hist 0 Installation No edit summary
- 13:5613:56, 5 March 2014 diff hist +3 SFS Estimation →Options
4 March 2014
- 16:3816:38, 4 March 2014 diff hist +372 SFS Estimation →How to plot
- 10:5010:50, 4 March 2014 diff hist +47 SFS Estimation →How to plot
- 10:4910:49, 4 March 2014 diff hist 0 N File:Sfs1.png No edit summary current
- 10:4910:49, 4 March 2014 diff hist 0 N File:Sfs2.png No edit summary current
- 10:4310:43, 4 March 2014 diff hist +6 SFS Estimation →How to plot
- 10:4310:43, 4 March 2014 diff hist −4 SFS Estimation →How to plot
- 10:4210:42, 4 March 2014 diff hist +11 SFS Estimation →How to plot
- 10:4210:42, 4 March 2014 diff hist +111 SFS Estimation →How to plot
- 10:4010:40, 4 March 2014 diff hist +133 SFS Estimation →How to plot
- 10:3810:38, 4 March 2014 diff hist 0 SFS Estimation →How to plot
- 10:3710:37, 4 March 2014 diff hist +249 SFS Estimation →How to plot
- 10:3410:34, 4 March 2014 diff hist +1 SFS Estimation →How to plot
- 10:3410:34, 4 March 2014 diff hist +82 SFS Estimation →How to plot
- 10:3310:33, 4 March 2014 diff hist +113 SFS Estimation →How to plot
- 10:3010:30, 4 March 2014 diff hist +15 SFS Estimation →Likelihood of the SFS
3 March 2014
- 13:2213:22, 3 March 2014 diff hist +74 User:Thorfinn No edit summary
28 February 2014
- 13:5213:52, 28 February 2014 diff hist +23 User:Thorfinn No edit summary
- 13:5213:52, 28 February 2014 diff hist −217 HWE and Inbreeding estimates →Estimation of individual inbreeding coefficients
- 13:5113:51, 28 February 2014 diff hist +54 HWE and Inbreeding estimates No edit summary
- 13:5013:50, 28 February 2014 diff hist −82 HWE and Inbreeding estimates No edit summary
- 13:4813:48, 28 February 2014 diff hist −184 Installation →Unix
- 13:4813:48, 28 February 2014 diff hist −145 MediaWiki:Sitenotice No edit summary
- 12:2212:22, 28 February 2014 diff hist +6 MediaWiki:Sitenotice No edit summary
- 12:2212:22, 28 February 2014 diff hist +139 MediaWiki:Sitenotice No edit summary
27 February 2014
- 13:0713:07, 27 February 2014 diff hist −37 User:Thorfinn No edit summary
25 February 2014
- 10:4510:45, 25 February 2014 diff hist +9 Genotype calling No edit summary
- 10:4510:45, 25 February 2014 diff hist +110 Genotype calling No edit summary
18 February 2014
- 10:5810:58, 18 February 2014 diff hist +46 User:Thorfinn No edit summary
- 09:2109:21, 18 February 2014 diff hist +135 Sites →Internal representation
17 February 2014
- 17:5217:52, 17 February 2014 diff hist +5 Sites No edit summary
- 17:3717:37, 17 February 2014 diff hist 0 Installation No edit summary
- 17:3617:36, 17 February 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 16:2916:29, 17 February 2014 diff hist +133 Major Minor No edit summary
- 12:5412:54, 17 February 2014 diff hist −1 Sites No edit summary
- 12:5412:54, 17 February 2014 diff hist +358 Sites No edit summary
- 11:1811:18, 17 February 2014 diff hist 0 Major Minor No edit summary
- 11:1711:17, 17 February 2014 diff hist 0 Major Minor No edit summary
- 11:1611:16, 17 February 2014 diff hist +10 Major Minor No edit summary
- 10:0410:04, 17 February 2014 diff hist +38 User:Thorfinn No edit summary
12 February 2014
- 17:5317:53, 12 February 2014 diff hist +34 User:Thorfinn No edit summary
10 February 2014
- 23:5623:56, 10 February 2014 diff hist +8 MsToGlf No edit summary
- 23:5523:55, 10 February 2014 diff hist −62 MsToGlf No edit summary
- 23:5323:53, 10 February 2014 diff hist +193 Genotype Likelihoods No edit summary
- 23:5123:51, 10 February 2014 diff hist +47 MediaWiki:Sidebar No edit summary
- 23:5023:50, 10 February 2014 diff hist +65 MediaWiki:Sidebar No edit summary
- 23:4923:49, 10 February 2014 diff hist +148 MsToGlf →Two populations
- 23:4623:46, 10 February 2014 diff hist +155 MsToGlf →Two populations
- 23:4023:40, 10 February 2014 diff hist +655 MsToGlf →Two populations
- 23:3523:35, 10 February 2014 diff hist +97 MsToGlf →Brief Overview
- 23:3223:32, 10 February 2014 diff hist +528 MsToGlf →Two populations
- 23:2523:25, 10 February 2014 diff hist +31 MsToGlf →Brief Overview
- 23:2423:24, 10 February 2014 diff hist +158 MsToGlf →With Selection
- 23:2023:20, 10 February 2014 diff hist +470 MsToGlf →With Selection
- 23:1623:16, 10 February 2014 diff hist +280 MsToGlf →Standard neutral model
- 23:1123:11, 10 February 2014 diff hist +107 MsToGlf →Standard neutral model
- 23:0923:09, 10 February 2014 diff hist +221 MsToGlf →Standard neutral model
- 23:0723:07, 10 February 2014 diff hist +286 MsToGlf →Standard neutral model
- 23:0223:02, 10 February 2014 diff hist +239 MsToGlf →Standard neutral model
- 22:5822:58, 10 February 2014 diff hist +325 MsToGlf →Output format
- 22:5422:54, 10 February 2014 diff hist +16 MsToGlf →Brief Overview
- 22:5322:53, 10 February 2014 diff hist +39 MsToGlf No edit summary
- 22:5322:53, 10 February 2014 diff hist +466 MsToGlf →Brief Overview
- 22:4422:44, 10 February 2014 diff hist +118 MsToGlf →Brief Overview
- 22:4122:41, 10 February 2014 diff hist +112 MsToGlf →Brief Overview
- 22:4022:40, 10 February 2014 diff hist +16 MsToGlf No edit summary
- 22:3922:39, 10 February 2014 diff hist +39 MsToGlf →Examples
- 22:3822:38, 10 February 2014 diff hist +27 MsToGlf No edit summary
- 22:3822:38, 10 February 2014 diff hist +12 MsToGlf No edit summary
- 22:3622:36, 10 February 2014 diff hist +164 MsToGlf No edit summary
- 22:2922:29, 10 February 2014 diff hist +34 N MsToGlf Created page with "For the Korneliussen2013 paper"
7 February 2014
- 14:2114:21, 7 February 2014 diff hist +469 RealSFS No edit summary
- 12:5212:52, 7 February 2014 diff hist +39 User:Thorfinn No edit summary
6 February 2014
- 13:4113:41, 6 February 2014 diff hist +104 User:Thorfinn No edit summary
- 12:4912:49, 6 February 2014 diff hist +91 User:Thorfinn No edit summary
- 01:5801:58, 6 February 2014 diff hist +50 User:Thorfinn No edit summary
5 February 2014
- 02:1802:18, 5 February 2014 diff hist +110 Change log →ANGSD
- 02:1402:14, 5 February 2014 diff hist +21 Change log →ANGSD
2 February 2014
- 18:3918:39, 2 February 2014 diff hist +150 Fasta No edit summary
- 18:3518:35, 2 February 2014 diff hist +50 User:Thorfinn No edit summary
- 18:2718:27, 2 February 2014 diff hist +40 User:Thorfinn No edit summary
31 January 2014
- 23:1023:10, 31 January 2014 diff hist +47 Change log →ANGSD
- 23:0823:08, 31 January 2014 diff hist +25 Thetas,Tajima,Neutrality tests No edit summary
28 January 2014
- 21:3821:38, 28 January 2014 diff hist +1 Error estimation →Example
- 21:3721:37, 28 January 2014 diff hist +214 Error estimation →Example
- 21:2321:23, 28 January 2014 diff hist 0 Error estimation →Example
27 January 2014
- 13:4713:47, 27 January 2014 diff hist +161 Change log →ANGSD
- 13:4613:46, 27 January 2014 diff hist 0 Installation No edit summary
- 13:4613:46, 27 January 2014 diff hist 0 Installation No edit summary
- 13:4613:46, 27 January 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
23 January 2014
- 13:3713:37, 23 January 2014 diff hist +29 Change log No edit summary
- 13:3713:37, 23 January 2014 diff hist +91 MediaWiki:Sitenotice No edit summary
- 13:3713:37, 23 January 2014 diff hist −112 ANGSD No edit summary
- 13:3613:36, 23 January 2014 diff hist 0 Installation No edit summary
- 13:3613:36, 23 January 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
16 January 2014
- 16:2816:28, 16 January 2014 diff hist −99 HWE and Inbreeding estimates No edit summary
- 16:2816:28, 16 January 2014 diff hist +348 HWE and Inbreeding estimates No edit summary
- 14:5514:55, 16 January 2014 diff hist +107 Change log →ANGSD
- 14:5414:54, 16 January 2014 diff hist 0 Installation No edit summary
- 14:5414:54, 16 January 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 14:5414:54, 16 January 2014 diff hist 0 ANGSD No edit summary
- 13:1413:14, 16 January 2014 diff hist 0 ANGSD →Synopsis
- 02:5702:57, 16 January 2014 diff hist −4 Genotype Likelihoods →Example
- 02:5602:56, 16 January 2014 diff hist −1 Association →Example
- 02:5502:55, 16 January 2014 diff hist +7 Association →Example
- 02:5502:55, 16 January 2014 diff hist −11 Genotype calling →example
- 02:5402:54, 16 January 2014 diff hist +24 Allele Frequencies →.mafs
- 02:5302:53, 16 January 2014 diff hist −4 Beagle input →Example
- 02:5202:52, 16 January 2014 diff hist +3 Citing angsd →SNP calling
- 02:5202:52, 16 January 2014 diff hist −10 Quick Start →Generate Beagle Likelihood files
- 02:5102:51, 16 January 2014 diff hist 0 Quick Start →Download and prepare
- 02:5002:50, 16 January 2014 diff hist −5 Genotype likelihoods from alignments new →Example
- 02:5002:50, 16 January 2014 diff hist −4 Plink →Example
- 02:4902:49, 16 January 2014 diff hist +17 SNP calling →example
- 02:4902:49, 16 January 2014 diff hist +6 SNP calling →example
- 02:4802:48, 16 January 2014 diff hist −167 SNP calling →Likelihood ratio test
- 02:4602:46, 16 January 2014 diff hist −6 Filters →Examples
- 02:4502:45, 16 January 2014 diff hist +3 Misc example →Using tglf files
- 02:4402:44, 16 January 2014 diff hist +57 Allele Frequencies →Brief Overview
- 02:4202:42, 16 January 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 02:4202:42, 16 January 2014 diff hist 0 Installation No edit summary
- 02:4102:41, 16 January 2014 diff hist +174 ANGSD No edit summary
- 02:3802:38, 16 January 2014 diff hist +7 ANGSD No edit summary
- 02:3802:38, 16 January 2014 diff hist −328 ANGSD No edit summary
- 02:2002:20, 16 January 2014 diff hist +174 Change log →ANGSD
14 January 2014
- 23:5123:51, 14 January 2014 diff hist −63 Quick Start No edit summary
13 January 2014
- 13:0813:08, 13 January 2014 diff hist +556 User:Thorfinn No edit summary
10 January 2014
- 19:2719:27, 10 January 2014 diff hist +99 Quick Start →Generate Beagle Likelihood files
- 19:2619:26, 10 January 2014 diff hist +932 Quick Start →Generate Beagle Likelihood files
- 19:2419:24, 10 January 2014 diff hist +150 Quick Start →Generate Beagle Likelihood files
- 19:2219:22, 10 January 2014 diff hist −3 Quick Start →Generate Beagle Likelihood files
- 19:2219:22, 10 January 2014 diff hist +1,046 Quick Start →Examples
- 19:1919:19, 10 January 2014 diff hist +226 Quick Start →Generate Beagle Likelihood files
- 19:1519:15, 10 January 2014 diff hist +38 Quick Start →Examples
- 19:0719:07, 10 January 2014 diff hist +441 Quick Start →Calculate Allele frequencies
- 19:0519:05, 10 January 2014 diff hist +886 Quick Start →Calculate Allele frequencies
- 19:0319:03, 10 January 2014 diff hist +297 Quick Start →adf
- 19:0219:02, 10 January 2014 diff hist +10 Quick Start →adf
- 19:0219:02, 10 January 2014 diff hist +1 Quick Start →adf
- 19:0219:02, 10 January 2014 diff hist +2 Quick Start →adf
- 19:0119:01, 10 January 2014 diff hist +9 Quick Start →adf
- 19:0019:00, 10 January 2014 diff hist −11 Quick Start →adf
- 18:5518:55, 10 January 2014 diff hist −2 Quick Start →adf
- 18:5518:55, 10 January 2014 diff hist +5 Quick Start →Calculate Allele frequencies
- 18:5518:55, 10 January 2014 diff hist −5 Quick Start →Calculate Allele frequencies
- 18:5418:54, 10 January 2014 diff hist +23 Quick Start →Calculate Allele frequencies
- 18:5418:54, 10 January 2014 diff hist +106 Quick Start →Calculate Allele frequencies
- 18:5318:53, 10 January 2014 diff hist −313 Quick Start →Calculate Allele frequencies
- 18:5218:52, 10 January 2014 diff hist +32 Quick Start →Calculate Allele frequencies
- 18:5018:50, 10 January 2014 diff hist +45 Quick Start →Calculate Allele frequencies
- 18:5018:50, 10 January 2014 diff hist +701 Quick Start →Calculate Allele frequencies
- 18:4918:49, 10 January 2014 diff hist −100 Quick Start →Calculate Allele frequencies
- 18:4918:49, 10 January 2014 diff hist −676 Quick Start →Calculate Allele frequencies
- 18:4818:48, 10 January 2014 diff hist +450 Quick Start →Calculate Allele frequencies
- 18:4618:46, 10 January 2014 diff hist +1,078 Quick Start →Calculate Allele frequencies
- 18:4218:42, 10 January 2014 diff hist +110 Quick Start →Calculate Allele frequencies
- 18:4118:41, 10 January 2014 diff hist +123 Quick Start →Calculate Allele frequencies
- 18:3618:36, 10 January 2014 diff hist −1 Quick Start →Calculate Allele frequencies
- 18:2718:27, 10 January 2014 diff hist +48 Change log →ANGSD
- 18:2618:26, 10 January 2014 diff hist −105 MediaWiki:Sitenotice No edit summary
- 18:2518:25, 10 January 2014 diff hist 0 Installation No edit summary
- 18:2518:25, 10 January 2014 diff hist 0 ANGSD No edit summary
- 15:1915:19, 10 January 2014 diff hist −247 User:Thorfinn No edit summary
- 02:0302:03, 10 January 2014 diff hist 0 Installation No edit summary
- 01:4501:45, 10 January 2014 diff hist +28 Change log →ANGSD