ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Thorfinn
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17 January 2017
- 17:3317:33, 17 January 2017 diff hist +6 PCA MDS →Options
12 January 2017
- 13:5713:57, 12 January 2017 diff hist +212 Error estimation →Error estimation using an outgroup and an error free individual current
10 January 2017
- 17:5717:57, 10 January 2017 diff hist +195 Heterozygosity →Local estimate
- 17:3317:33, 10 January 2017 diff hist +173 Heterozygosity No edit summary
- 17:3217:32, 10 January 2017 diff hist +111 Heterozygosity →Global estimate
- 17:3117:31, 10 January 2017 diff hist +2 Heterozygosity →Global estimate
- 17:3117:31, 10 January 2017 diff hist +459 Heterozygosity →Global estimate
- 17:2817:28, 10 January 2017 diff hist +147 Heterozygosity →Global estimate
- 17:2617:26, 10 January 2017 diff hist +101 Heterozygosity →Global estimate
- 17:2417:24, 10 January 2017 diff hist +92 Heterozygosity →Global estimate
- 17:2317:23, 10 January 2017 diff hist +267 Heterozygosity No edit summary
- 17:2217:22, 10 January 2017 diff hist +147 Heterozygosity No edit summary
- 17:1917:19, 10 January 2017 diff hist +63 N Heterozygosity Created page with "The heterozygosity is the proportion of heterozygous genotypes."
15 December 2016
- 13:4413:44, 15 December 2016 diff hist −326 HWE test No edit summary
- 11:1811:18, 15 December 2016 diff hist +411 Genotype calling →Examples
- 11:1311:13, 15 December 2016 diff hist +33 Genotype calling No edit summary
- 10:1510:15, 15 December 2016 diff hist +239 Fst →realSFS fst print
- 10:0410:04, 15 December 2016 diff hist +112 Fst →realSFS fst print
- 10:0210:02, 15 December 2016 diff hist +22 Fst →realSFS fst print
24 November 2016
- 19:5319:53, 24 November 2016 diff hist +110 HWE test No edit summary
- 19:4519:45, 24 November 2016 diff hist +77 SnpFilters No edit summary
- 19:4319:43, 24 November 2016 diff hist +25 SnpFilters No edit summary
- 19:1319:13, 24 November 2016 diff hist −80 SnpFilters No edit summary
- 19:1319:13, 24 November 2016 diff hist −11 SnpFilters No edit summary
15 November 2016
- 17:5717:57, 15 November 2016 diff hist −53 Installation No edit summary
- 17:5617:56, 15 November 2016 diff hist +277 Installation No edit summary
- 17:5417:54, 15 November 2016 diff hist 0 MediaWiki:Sitenotice No edit summary
- 17:5317:53, 15 November 2016 diff hist +36 Change log No edit summary
- 17:5217:52, 15 November 2016 diff hist +208 Thorfinn No edit summary
- 17:5117:51, 15 November 2016 diff hist +60 Change log No edit summary
- 17:4517:45, 15 November 2016 diff hist +318 Thorfinn No edit summary
- 17:4217:42, 15 November 2016 diff hist +176 Thorfinn No edit summary
- 17:4017:40, 15 November 2016 diff hist −38 Thorfinn No edit summary
- 17:3817:38, 15 November 2016 diff hist −1 Installation No edit summary
- 17:3617:36, 15 November 2016 diff hist 0 Installation No edit summary
- 17:3517:35, 15 November 2016 diff hist 0 Installation No edit summary
8 November 2016
- 22:3322:33, 8 November 2016 diff hist +232 Direct Ancestry No edit summary current
- 19:3319:33, 8 November 2016 diff hist +85 N Direct Ancestry Created page with "Based on the 2dsfs for two individuals it is possible to estimate the direct ancestry"
- 18:5918:59, 8 November 2016 diff hist 0 N File:AngsLogoTmp.png No edit summary current
7 October 2016
- 12:4812:48, 7 October 2016 diff hist +207 Fst No edit summary
6 September 2016
- 09:5309:53, 6 September 2016 diff hist +3 Input →Arguments
5 September 2016
- 17:3217:32, 5 September 2016 diff hist +12 Filters →Extra
26 August 2016
- 09:5209:52, 26 August 2016 diff hist 0 Thetas,Tajima,Neutrality tests No edit summary
- 09:5109:51, 26 August 2016 diff hist 0 Thetas,Tajima,Neutrality tests →Step 1: Finding a 'global estimate' of the SFS
- 09:5009:50, 26 August 2016 diff hist 0 Thetas,Tajima,Neutrality tests No edit summary
10 August 2016
- 11:1111:11, 10 August 2016 diff hist +121 Haploid calling No edit summary
9 August 2016
- 22:0522:05, 9 August 2016 diff hist 0 Installation →Unix
15 July 2016
- 13:1113:11, 15 July 2016 diff hist +274 RealSFS →Using NGStools/NGSpopgen
- 13:1113:11, 15 July 2016 diff hist +104 RealSFS No edit summary
7 July 2016
- 12:3512:35, 7 July 2016 diff hist +60 Change log No edit summary