ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Thorfinn
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11 October 2018
- 12:1812:18, 11 October 2018 diff hist 0 MediaWiki:Sitenotice No edit summary
- 12:1812:18, 11 October 2018 diff hist 0 Thorfinn →Make a new github version to put on github
- 12:1612:16, 11 October 2018 diff hist 0 Installation No edit summary
- 12:1512:15, 11 October 2018 diff hist 0 Thorfinn →Make a combined angsd htslib to put on wiki download
- 11:3211:32, 11 October 2018 diff hist −43 Installation No edit summary
28 September 2018
- 05:3505:35, 28 September 2018 diff hist −11 Installation →Install from github
- 05:1105:11, 28 September 2018 diff hist 0 Installation →Install from github
- 05:0205:02, 28 September 2018 diff hist +54 Installation →Install from github
20 April 2018
- 11:1011:10, 20 April 2018 diff hist +160 ThetaStat No edit summary current
26 January 2018
- 00:1300:13, 26 January 2018 diff hist 0 User:Thorfinn →ms and psmc stuff current
25 January 2018
- 23:0723:07, 25 January 2018 diff hist +1 User:Thorfinn →ms and psmc stuff
- 23:0423:04, 25 January 2018 diff hist +3 User:Thorfinn →ms and psmc stuff
- 23:0223:02, 25 January 2018 diff hist 0 User:Thorfinn →ms and psmc stuff
- 22:5922:59, 25 January 2018 diff hist +4 User:Thorfinn →ms and psmc stuff
- 22:5622:56, 25 January 2018 diff hist +1 User:Thorfinn →ms and psmc stuff
- 22:5622:56, 25 January 2018 diff hist +2 User:Thorfinn →ms and psmc stuff
- 22:5622:56, 25 January 2018 diff hist +739 User:Thorfinn →ms stuff
- 21:2621:26, 25 January 2018 diff hist 0 User:Thorfinn →ms stuff
- 21:2621:26, 25 January 2018 diff hist +57 User:Thorfinn →ms stuff
- 21:2221:22, 25 January 2018 diff hist −1 User:Thorfinn →ms stuff
- 21:2121:21, 25 January 2018 diff hist +112 User:Thorfinn No edit summary
9 January 2018
- 13:5413:54, 9 January 2018 diff hist 0 Installation →Unix
- 13:5413:54, 9 January 2018 diff hist 0 Installation →Download and Installation
- 13:5413:54, 9 January 2018 diff hist 0 Installation No edit summary
- 13:5113:51, 9 January 2018 diff hist 0 Change log No edit summary
- 13:5013:50, 9 January 2018 diff hist +60 Change log →Latests
- 13:4913:49, 9 January 2018 diff hist 0 MediaWiki:Sitenotice No edit summary
- 13:4713:47, 9 January 2018 diff hist 0 Thorfinn →Make a new github version to put on github
- 13:4713:47, 9 January 2018 diff hist 0 Thorfinn →Make a new github version to put on github
- 13:4713:47, 9 January 2018 diff hist 0 Thorfinn →Make a new github version to put on github
- 13:3613:36, 9 January 2018 diff hist 0 Thorfinn →Make a combined angsd htslib to put on wiki download
6 November 2017
- 18:5318:53, 6 November 2017 diff hist +67 Beagle input No edit summary current
2 November 2017
- 21:3921:39, 2 November 2017 diff hist +766 Input →-glf10_text
- 21:3521:35, 2 November 2017 diff hist +17 Input →VCF files
- 21:3521:35, 2 November 2017 diff hist −17 Input →-glf10_text
- 21:2121:21, 2 November 2017 diff hist +17 Input →Genotype Likelihood Files
- 21:2021:20, 2 November 2017 diff hist +87 Input →-glf
1 November 2017
- 15:0815:08, 1 November 2017 diff hist −18 Input →Arguments
23 October 2017
- 15:3215:32, 23 October 2017 diff hist +1 HWE test →example current
12 October 2017
- 05:1105:11, 12 October 2017 diff hist +61 Fst →realSFS fst print
26 September 2017
- 18:0918:09, 26 September 2017 diff hist +62 Fasta No edit summary
- 18:0218:02, 26 September 2017 diff hist +43 Fasta →Brief Overview
- 18:0118:01, 26 September 2017 diff hist +25 Fasta No edit summary
- 18:0018:00, 26 September 2017 diff hist +26 Fasta No edit summary
8 September 2017
- 09:3909:39, 8 September 2017 diff hist +118 Fst →realSFS fst print
- 09:3009:30, 8 September 2017 diff hist −81 Fst →realSFS fst print
27 June 2017
- 21:2421:24, 27 June 2017 diff hist +116 SnpFilters →Example run with hetfilter current
- 21:2221:22, 27 June 2017 diff hist +6 SnpFilters →Example run with hetfilter
- 21:2221:22, 27 June 2017 diff hist +6 SnpFilters →Example run with hetfilter
- 21:2221:22, 27 June 2017 diff hist +1,803 SnpFilters →Example run with hetfilter
- 21:2121:21, 27 June 2017 diff hist +134 SnpFilters →Example run with hetfilter
- 21:2021:20, 27 June 2017 diff hist +32 SnpFilters No edit summary
- 21:0521:05, 27 June 2017 diff hist +128 SnpFilters No edit summary
22 June 2017
- 18:2118:21, 22 June 2017 diff hist +46 Input →Arguments
- 17:5817:58, 22 June 2017 diff hist 0 Installation No edit summary
- 17:5617:56, 22 June 2017 diff hist +60 Change log No edit summary
- 17:5617:56, 22 June 2017 diff hist 0 MediaWiki:Sitenotice No edit summary
- 17:5317:53, 22 June 2017 diff hist −10 Thorfinn →Make a new github version to put on github
- 17:5217:52, 22 June 2017 diff hist +119 Thorfinn →Make a new github version to put on github
- 17:5017:50, 22 June 2017 diff hist 0 Thorfinn →Make a new github version to put on github
- 17:5017:50, 22 June 2017 diff hist +55 Thorfinn →Make a new github version to put on github
- 17:4917:49, 22 June 2017 diff hist +9 Thorfinn →Make a new github version to put on github
- 17:4817:48, 22 June 2017 diff hist −53 Thorfinn →Make a new github version to put on github
- 17:4717:47, 22 June 2017 diff hist +4 Thorfinn →Make a combined angsd htslib to put on wiki download
- 17:3217:32, 22 June 2017 diff hist +6 Thorfinn →Make a combined angsd htslib to put on wiki download
- 17:3117:31, 22 June 2017 diff hist −68 Thorfinn →Make a combined angsd htslib to put on wiki download
- 17:3017:30, 22 June 2017 diff hist −3 Thorfinn →Make a combined angsd htslib to put on wiki download
- 17:3017:30, 22 June 2017 diff hist +103 Thorfinn →Make a combined angsd htslib to put on wiki download
31 May 2017
- 16:1716:17, 31 May 2017 diff hist +18 Input →Arguments
29 May 2017
8 February 2017
- 18:5918:59, 8 February 2017 diff hist +1 Thetas,Tajima,Neutrality tests →.thetas.gz.pestPG
- 18:5818:58, 8 February 2017 diff hist +64 Thetas,Tajima,Neutrality tests →Example
- 18:5718:57, 8 February 2017 diff hist +1 Thetas,Tajima,Neutrality tests →./thetaStat print angsdput.thetas.gz
- 18:5618:56, 8 February 2017 diff hist +42 Thetas,Tajima,Neutrality tests →Example Output
- 18:5518:55, 8 February 2017 diff hist +1 Thetas,Tajima,Neutrality tests →Step 3b: Sliding Window example
- 18:5418:54, 8 February 2017 diff hist +2 Thetas,Tajima,Neutrality tests →Step 3a: Estimate Tajimas D and other statistics
- 18:5418:54, 8 February 2017 diff hist +1 Thetas,Tajima,Neutrality tests →Full command list for below examples
- 18:5318:53, 8 February 2017 diff hist +934 ThetaStat No edit summary
- 18:5018:50, 8 February 2017 diff hist −112 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 18:4918:49, 8 February 2017 diff hist −14 Thetas,Tajima,Neutrality tests →Step 3b: Sliding Window example
- 18:4818:48, 8 February 2017 diff hist −157 Thetas,Tajima,Neutrality tests →Step 3a: Estimate Tajimas D and other statistics
- 18:4718:47, 8 February 2017 diff hist +6 Thetas,Tajima,Neutrality tests →Step 3a: Estimate Tajimas D and other statistics
- 18:4518:45, 8 February 2017 diff hist −101 Thetas,Tajima,Neutrality tests →Step 3a: Estimate Tajimas D and other statistics
- 18:4518:45, 8 February 2017 diff hist −35 Thetas,Tajima,Neutrality tests →Step 2: Calculate the thetas for each site
- 18:4418:44, 8 February 2017 diff hist −86 Thetas,Tajima,Neutrality tests →Step 2: Calculate the thetas for each site
- 18:4118:41, 8 February 2017 diff hist +145 Thetas,Tajima,Neutrality tests →Step 2: Calculate the thetas for each site
- 18:3918:39, 8 February 2017 diff hist −57 Thetas,Tajima,Neutrality tests →Full command list for below examples
- 18:3918:39, 8 February 2017 diff hist +14 Thetas,Tajima,Neutrality tests →Example
- 18:3818:38, 8 February 2017 diff hist +13 Thetas,Tajima,Neutrality tests No edit summary
24 January 2017
- 13:5113:51, 24 January 2017 diff hist +80 Heterozygosity No edit summary current
- 13:4813:48, 24 January 2017 diff hist +2 Heterozygosity No edit summary
- 13:3113:31, 24 January 2017 diff hist +4 Heterozygosity No edit summary
- 13:3013:30, 24 January 2017 diff hist −2 Heterozygosity No edit summary
- 13:3013:30, 24 January 2017 diff hist +4 Heterozygosity No edit summary
23 January 2017
- 15:3915:39, 23 January 2017 diff hist 0 Installation No edit summary
- 15:3915:39, 23 January 2017 diff hist 0 MediaWiki:Sitenotice No edit summary
- 15:3715:37, 23 January 2017 diff hist +60 Change log →Latests
- 15:3115:31, 23 January 2017 diff hist +2 Thorfinn No edit summary
- 15:3015:30, 23 January 2017 diff hist +70 Thorfinn No edit summary
- 15:3015:30, 23 January 2017 diff hist +27 Thorfinn →Make a combined angsd htslib to put on wiki download