ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Thorfinn
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15 March 2021
- 11:3911:39, 15 March 2021 diff hist 0 Thorfinn →Make a new github version to put on github
- 11:3811:38, 15 March 2021 diff hist +12 Thorfinn →Make a combined angsd htslib to put on wiki download
27 October 2020
- 11:2111:21, 27 October 2020 diff hist −118 Haploid calling →Major bug in version 0.911 (not in <0.911) current
27 August 2020
- 14:4014:40, 27 August 2020 diff hist +80 Thetas,Tajima,Neutrality tests →Full command list for below examples current
2 May 2020
- 06:3406:34, 2 May 2020 diff hist 0 Allele Counts →Depth Distribution current
27 April 2020
- 18:3818:38, 27 April 2020 diff hist +60 Change log →Latests
- 17:3717:37, 27 April 2020 diff hist 0 Thorfinn No edit summary
1 April 2020
- 13:0613:06, 1 April 2020 diff hist +109 Thetas,Tajima,Neutrality tests →Step 1: Finding a 'global estimate' of the SFS
- 13:0513:05, 1 April 2020 diff hist +169 Thetas,Tajima,Neutrality tests →Full command list for below examples
- 13:0313:03, 1 April 2020 diff hist +37 Thetas,Tajima,Neutrality tests →Full command list for below examples
- 12:5612:56, 1 April 2020 diff hist −493 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 12:5212:52, 1 April 2020 diff hist −38 Thetas,Tajima,Neutrality tests →Step 2: Calculate the thetas for each site
15 November 2019
- 08:4908:49, 15 November 2019 diff hist −154 Filters →Number of non missing individuals current
- 08:4808:48, 15 November 2019 diff hist +3 Filters →Number of non missing individuals
25 October 2019
- 17:5217:52, 25 October 2019 diff hist +95 SFS Estimation No edit summary
26 August 2019
- 12:1212:12, 26 August 2019 diff hist 0 Installation No edit summary
- 12:1012:10, 26 August 2019 diff hist +60 Change log No edit summary
- 12:0912:09, 26 August 2019 diff hist 0 MediaWiki:Sitenotice No edit summary
- 12:0912:09, 26 August 2019 diff hist +16 Thorfinn No edit summary
17 August 2019
- 03:3803:38, 17 August 2019 diff hist +595 Fst →Note about fst for folded spectra current
- 03:3103:31, 17 August 2019 diff hist +39 Fst No edit summary
- 03:2603:26, 17 August 2019 diff hist +15 2d SFS Estimation No edit summary current
- 03:2503:25, 17 August 2019 diff hist +140 2d SFS Estimation No edit summary
- 03:2403:24, 17 August 2019 diff hist +36 2d SFS Estimation No edit summary
- 03:2303:23, 17 August 2019 diff hist +174 2d SFS Estimation No edit summary
30 April 2019
- 17:2617:26, 30 April 2019 diff hist +535 Plink No edit summary current
22 February 2019
- 18:4018:40, 22 February 2019 diff hist −43 Installation No edit summary
- 18:3918:39, 22 February 2019 diff hist +60 Change log →Latests
- 18:3818:38, 22 February 2019 diff hist 0 MediaWiki:Sitenotice No edit summary
- 18:3718:37, 22 February 2019 diff hist 0 Thorfinn →Make a new github version to put on github
- 18:3618:36, 22 February 2019 diff hist 0 Thorfinn →Make a combined angsd htslib to put on wiki download
- 18:3018:30, 22 February 2019 diff hist 0 Thorfinn →Make a new github version to put on github
- 18:2918:29, 22 February 2019 diff hist 0 Thorfinn →Make a combined angsd htslib to put on wiki download
- 18:2818:28, 22 February 2019 diff hist −199 Input →Arguments
- 18:2718:27, 22 February 2019 diff hist 0 Input →Example
- 18:2518:25, 22 February 2019 diff hist −110 Input →VCF files
- 18:2418:24, 22 February 2019 diff hist −2 Input →VCF files
- 18:2318:23, 22 February 2019 diff hist +4,482 Input →Sequence data (BAM/CRAM/mpileup)
- 18:2318:23, 22 February 2019 diff hist −4,482 Input →VCF files
- 18:2318:23, 22 February 2019 diff hist −4,724 Input →VCF files
28 January 2019
- 18:1518:15, 28 January 2019 diff hist 0 Thorfinn →How to deploy
- 18:0818:08, 28 January 2019 diff hist +60 Change log No edit summary
- 18:0818:08, 28 January 2019 diff hist 0 MediaWiki:Sitenotice No edit summary
- 17:5617:56, 28 January 2019 diff hist +20 Thorfinn →Make a combined angsd htslib to put on wiki download
11 October 2018
- 12:1912:19, 11 October 2018 diff hist +59 Change log →Latests
- 12:1812:18, 11 October 2018 diff hist 0 MediaWiki:Sitenotice No edit summary
- 12:1812:18, 11 October 2018 diff hist 0 Thorfinn →Make a new github version to put on github
- 12:1612:16, 11 October 2018 diff hist 0 Installation No edit summary
- 12:1512:15, 11 October 2018 diff hist 0 Thorfinn →Make a combined angsd htslib to put on wiki download
- 11:3211:32, 11 October 2018 diff hist −43 Installation No edit summary