ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
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- LD
- Li2010
- Li2011
- MajorMinor Method
- Major Minor
- Majorminor
- Memory Usage
- Misc example
- Mismatch
- MsToGlf
- NGSadmix
- NgsRelate
- Nielsen2012
- Orlando2013
- PCA
- PCA MDS
- Pbs
- Plink
- PostFreq
- Quick Start
- Rasmussen2011
- RealSFS
- RealSFSmethod
- Regionfile
- Relatedness
- SFS Estimation
- SNP Calling
- SNP calling
- SYKmaf
- Safv3
- Sites
- Skotte
- Skotte2012
- SnpFilters
- SoapSNP
- Supersim
- Temp
- ThetaStat
- Thetas,Tajima,Neutrality tests
- Thorfinn
- Tutorial
- Vcf