ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

Difference between revisions of "Thorfinn"

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(Make a new github version to put on github)
Line 4: Line 4:
 
copy latest and make a new annotated tag and push to wiki
 
copy latest and make a new annotated tag and push to wiki
 
<pre>
 
<pre>
VERSION=0.928
+
VERSION=0.930
 
mkdir delme
 
mkdir delme
 
cd delme
 
cd delme
 
git clone --depth=1 https://github.com/ANGSD/angsd
 
git clone --depth=1 https://github.com/ANGSD/angsd
 
git clone --depth=1 https://github.com/SAMtools/htslib
 
git clone --depth=1 https://github.com/SAMtools/htslib
cd angsd; git tag -a ${VERSION} -m "time for a new version"
+
cd angsd; git tag -a ${VERSION} -m "time for version ${VERSION}"
 
sed "s/PACKAGE_VERSION  = .*/PACKAGE_VERSION  = ${VERSION}/" Makefile >tmp
 
sed "s/PACKAGE_VERSION  = .*/PACKAGE_VERSION  = ${VERSION}/" Makefile >tmp
 
diff Makefile tmp
 
diff Makefile tmp
Line 21: Line 21:
  
 
<pre>
 
<pre>
VERSION=0.929
+
VERSION=0.931
 
cd angsd/
 
cd angsd/
 
sed "s/PACKAGE_VERSION  = .*/PACKAGE_VERSION  = ${VERSION}/" Makefile >tmp
 
sed "s/PACKAGE_VERSION  = .*/PACKAGE_VERSION  = ${VERSION}/" Makefile >tmp
Line 27: Line 27:
 
mv tmp Makefile
 
mv tmp Makefile
 
git commit Makefile -m "Preparing new ${VERSION} version"
 
git commit Makefile -m "Preparing new ${VERSION} version"
git tag -a ${VERSION} -m "time for a new version"
+
git tag -a ${VERSION} -m "time for a new version ${VERSION}"
 
git push
 
git push
 
git push --tags
 
git push --tags
 
</pre>
 
</pre>

Revision as of 12:09, 26 August 2019

How to deploy

This page described how a new version should be put on wiki and github

Make a combined angsd htslib to put on wiki download

copy latest and make a new annotated tag and push to wiki

VERSION=0.930
mkdir delme
cd delme
git clone --depth=1 https://github.com/ANGSD/angsd
git clone --depth=1 https://github.com/SAMtools/htslib
cd angsd; git tag -a ${VERSION} -m "time for version ${VERSION}"
sed "s/PACKAGE_VERSION  = .*/PACKAGE_VERSION  = ${VERSION}/" Makefile >tmp
diff Makefile tmp
mv tmp Makefile
cd ..
tar --exclude='.git' -cvf angsd${VERSION}.tar.gz angsd htslib/
scp angsd${VERSION}.tar.gz software@popgen.dk:/home/software/download/angsd/

Make a new github version to put on github

VERSION=0.931
cd angsd/
sed "s/PACKAGE_VERSION  = .*/PACKAGE_VERSION  = ${VERSION}/" Makefile >tmp
diff Makefile tmp
mv tmp Makefile
git commit Makefile -m "Preparing new ${VERSION} version"
git tag -a ${VERSION} -m "time for a new version ${VERSION}"
git push
git push --tags