ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
Difference between revisions of "Thorfinn"
From angsd
(→Make a combined angsd htslib to put on wiki download) |
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| Line 4: | Line 4: | ||
copy latest and make a new annotated tag and push to wiki | copy latest and make a new annotated tag and push to wiki | ||
<pre> | <pre> | ||
| − | VERSION=0. | + | VERSION=0.934 |
mkdir delme | mkdir delme | ||
cd delme | cd delme | ||
git clone --depth=1 https://github.com/ANGSD/angsd | git clone --depth=1 https://github.com/ANGSD/angsd | ||
| − | git clone --depth=1 https://github.com/SAMtools/htslib | + | git clone --depth=1 --recursive https://github.com/SAMtools/htslib |
cd angsd; git tag -a ${VERSION} -m "time for version ${VERSION}" | cd angsd; git tag -a ${VERSION} -m "time for version ${VERSION}" | ||
sed "s/PACKAGE_VERSION = .*/PACKAGE_VERSION = ${VERSION}/" Makefile >tmp | sed "s/PACKAGE_VERSION = .*/PACKAGE_VERSION = ${VERSION}/" Makefile >tmp | ||
Revision as of 11:38, 15 March 2021
How to deploy
This page described how a new version should be put on wiki and github
Make a combined angsd htslib to put on wiki download
copy latest and make a new annotated tag and push to wiki
VERSION=0.934
mkdir delme
cd delme
git clone --depth=1 https://github.com/ANGSD/angsd
git clone --depth=1 --recursive https://github.com/SAMtools/htslib
cd angsd; git tag -a ${VERSION} -m "time for version ${VERSION}"
sed "s/PACKAGE_VERSION = .*/PACKAGE_VERSION = ${VERSION}/" Makefile >tmp
diff Makefile tmp
mv tmp Makefile
cd ..
tar --exclude='.git' -cvf angsd${VERSION}.tar.gz angsd htslib/
scp angsd${VERSION}.tar.gz software@popgen.dk:/home/software/download/angsd/
Make a new github version to put on github
VERSION=0.933
cd angsd/
sed "s/PACKAGE_VERSION = .*/PACKAGE_VERSION = ${VERSION}/" Makefile >tmp
diff Makefile tmp
mv tmp Makefile
git commit Makefile -m "Preparing new ${VERSION} version"
git tag -a ${VERSION} -m "time for a new version ${VERSION}"
git push
git push --tags
