ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

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  1. ErrorSykMethod‏‎ (2 revisions)
  2. Error estimation method‏‎ (2 revisions)
  3. Orlando2013‏‎ (2 revisions)
  4. Skotte‏‎ (2 revisions)
  5. Li2011‏‎ (2 revisions)
  6. Glf files‏‎ (2 revisions)
  7. Direct Ancestry‏‎ (2 revisions)
  8. Pbs‏‎ (2 revisions)
  9. LD‏‎ (2 revisions)
  10. RealSFSmethod‏‎ (3 revisions)
  11. Regionfile‏‎ (3 revisions)
  12. SNP Calling‏‎ (3 revisions)
  13. ThetaStat‏‎ (3 revisions)
  14. Changes‏‎ (3 revisions)
  15. Kim2011‏‎ (3 revisions)
  16. Gatk‏‎ (3 revisions)
  17. SYKmaf‏‎ (3 revisions)
  18. Korneliussen2013‏‎ (4 revisions)
  19. Misc example‏‎ (4 revisions)
  20. Nielsen2012‏‎ (4 revisions)
  21. Skotte2012‏‎ (4 revisions)
  22. Mismatch‏‎ (5 revisions)
  23. Vcf‏‎ (5 revisions)
  24. Genotype Distribution‏‎ (6 revisions)
  25. Base quality‏‎ (7 revisions)
  26. PCA‏‎ (7 revisions)
  27. Genotype likelihoods from alignments new‏‎ (8 revisions)
  28. Glcomparison‏‎ (8 revisions)
  29. SNP calling‏‎ (8 revisions)
  30. Introduction‏‎ (8 revisions)
  31. Haploid calling‏‎ (9 revisions)
  32. NGSadmix‏‎ (10 revisions)
  33. Angsd structure‏‎ (11 revisions)
  34. Depth‏‎ (13 revisions)
  35. Beagle input‏‎ (13 revisions)
  36. Authors‏‎ (14 revisions)
  37. Heterozygosity‏‎ (16 revisions)
  38. SnpFilters‏‎ (18 revisions)
  39. HWE test‏‎ (19 revisions)
  40. HWE and Inbreeding estimates‏‎ (20 revisions)
  41. Safv3‏‎ (20 revisions)
  42. Relatedness‏‎ (21 revisions)
  43. Citing angsd‏‎ (23 revisions)
  44. Fst‏‎ (23 revisions)
  45. Plink‏‎ (24 revisions)
  46. Genotype calling‏‎ (27 revisions)
  47. Contamination‏‎ (29 revisions)
  48. Abbababa‏‎ (31 revisions)
  49. PCA MDS‏‎ (39 revisions)
  50. Tutorial‏‎ (39 revisions)
  51. Thorfinn‏‎ (39 revisions)
  52. MsToGlf‏‎ (39 revisions)
  53. 2d SFS Estimation‏‎ (43 revisions)
  54. Sites‏‎ (45 revisions)
  55. Major Minor‏‎ (46 revisions)
  56. Bugs‏‎ (50 revisions)
  57. RealSFS‏‎ (54 revisions)
  58. Abbababa2‏‎ (54 revisions)
  59. Fasta‏‎ (60 revisions)
  60. Fst PCA‏‎ (60 revisions)
  61. Allele Counts‏‎ (62 revisions)
  62. Allele Frequencies‏‎ (71 revisions)
  63. Quick Start‏‎ (82 revisions)
  64. Filters‏‎ (86 revisions)
  65. Change log‏‎ (104 revisions)
  66. Error estimation‏‎ (105 revisions)
  67. Input‏‎ (125 revisions)
  68. ANGSD‏‎ (141 revisions)
  69. Installation‏‎ (151 revisions)
  70. Thetas,Tajima,Neutrality tests‏‎ (154 revisions)
  71. Genotype Likelihoods‏‎ (161 revisions)
  72. Association‏‎ (189 revisions)
  73. SFS Estimation‏‎ (267 revisions)

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