ANGSD: Difference between revisions
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<classdiagram type="dir:LR"> | |||
[sequence data]->[genotype;likelihoods] | |||
[genotype;likelihoods]->[genotype;probabilities] | |||
[sequence files|bam files;SOAP files{bg:orange}]->[sequence data] | |||
[glf files|glfv3;soapSNP{bg:orange}]->[genotype;likelihoods] | |||
[genotype prob|beagle output{bg:orange}]->[genotype;probabilities] | |||
</classdiagram> | |||
= Analysis of Next Generation Sequencing Data = | = Analysis of Next Generation Sequencing Data = | ||
This is a general purpose software for analysis of next generation sequencing data including QC, Association and population genetic analysis. | This is a general purpose software for analysis of next generation sequencing data including QC, Association and population genetic analysis. | ||
ANGSD has its own wiki at http://popgen.dk/angsd | ANGSD has its own wiki at http://popgen.dk/angsd | ||
Revision as of 19:52, 19 June 2013
<classdiagram type="dir:LR"> [sequence data]->[genotype;likelihoods] [genotype;likelihoods]->[genotype;probabilities] [sequence files|bam files;SOAP files{bg:orange}]->[sequence data] [glf files|glfv3;soapSNP{bg:orange}]->[genotype;likelihoods] [genotype prob|beagle output{bg:orange}]->[genotype;probabilities] </classdiagram>
Analysis of Next Generation Sequencing Data
This is a general purpose software for analysis of next generation sequencing data including QC, Association and population genetic analysis.
ANGSD has its own wiki at http://popgen.dk/angsd