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** Relate#Citation|citation | ** Relate#Citation|citation | ||
** Relate#Change_log|Log | ** Relate#Change_log|Log | ||
* NGSadmix | * NGSadmix | ||
**ngsAdmix|Population Structure for NGS data | **ngsAdmix|Population Structure for NGS data | ||
** NgsAdmix# | ** NgsAdmix#Download_and_Installation|Download | ||
** NgsAdmix# | ** NgsAdmix#Run_command_example | Example | ||
** NgsAdmix# | ** NgsAdmix#Input_File| Input files | ||
** | ** NgsAdmixTutorial|Tutorial | ||
* asaMap | * asaMap | ||
** asaMap| Ancestry-specific association mapping in admixed populations | ** asaMap| Ancestry-specific association mapping in admixed populations | ||
| Line 42: | Line 38: | ||
** relateAdmix#Run_example | Example | ** relateAdmix#Run_example | Example | ||
* LDadmix | * LDadmix | ||
* BAMSE | |||
** BAMSE| Bayesian Association of multiple SNPs | |||
* CATS | |||
** CATS|power for two stage GWAS | |||
* R scripts | * R scripts | ||
** Rscripts| various R scripts | ** Rscripts| various R scripts | ||
Revision as of 11:40, 12 July 2019
- Main
- ANGSD
- http://popgen.dk/angsd |Website
- NgsRelate
- PCAngsd
- PCAngsd|PCA, selection and inbreeding for NGS data
- Relate
- Relate|Local IBD relatedness
- Relate#Download_and_Installation|Download
- Relate#Manual|Manual
- Relate#Citation|citation
- Relate#Change_log|Log
- NGSadmix
- ngsAdmix|Population Structure for NGS data
- NgsAdmix#Download_and_Installation|Download
- NgsAdmix#Run_command_example | Example
- NgsAdmix#Input_File| Input files
- NgsAdmixTutorial|Tutorial
- asaMap
- asaMap| Ancestry-specific association mapping in admixed populations
- asaMap#Download| Download
- asaMap#Example| Example
- asaMap#Input_Files| Input files
- asaMap#Citation| Citation
- fastNGSadmix
- fastNGSadmix| admixture proportions and principal component analysis of a single NGS sample
- FastNGSadmix#Download| Download
- FastNGSadmix#Input_Files| Input files
- FastNGSadmix#Running_fastNGSadmix| Running fastNGSadmix
- FastNGSadmix#PCA| PCA
- FastNGSadmix#Making_a_reference_panel| Making a reference panel
- FastNGSadmix#Human_reference_panels| Human reference panels
- FastNGSadmix#Citation| Citation
- relateAdmix
- relateAdmix|Relatedness estimation for admixed individuals
- relateAdmix#Installation|Download
- relateAdmix#Run_example | Example
- LDadmix
- BAMSE
- BAMSE| Bayesian Association of multiple SNPs
- CATS
- CATS|power for two stage GWAS
- R scripts
- Rscripts| various R scripts
- navigation
- mainpage|Software
- http://popgen.dk%7CPopgen.dk
- http://popgen.dk/wiki%7CANGSD
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