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* NgsRelate | * NgsRelate | ||
**http://www.popgen.dk/software/index.php/NgsRelate | Website | **http://www.popgen.dk/software/index.php/NgsRelate | Website | ||
* PCAngsd | |||
** PCAngsd|PCA, selection and inbreeding for NGS data | |||
* Relate | * Relate | ||
** Relate|Local IBD relatedness | ** Relate|Local IBD relatedness | ||
Revision as of 14:21, 18 July 2017
- Main
- ANGSD
- NgsRelate
- PCAngsd
- PCAngsd|PCA, selection and inbreeding for NGS data
- Relate
- Relate|Local IBD relatedness
- Relate#Download_and_Installation|Download
- Relate#Manual|Manual
- Relate#Citation|citation
- Relate#Change_log|Log
- BAMSE
- BAMSE| Bayesian Association of multiple SNPs
- CATS
- CATS|power for two stage GWAS
- NGSadmix
- ngsAdmix|Population Structure for NGS data
- NgsAdmix#Installation|Download
- NgsAdmix#Run_example | Example
- NgsAdmix#Input_Files| Input files
- NgsAdmix#citation|Citation
- fastNGSadmix
- FastNGSadmix#Download| Download
- FastNGSadmix#Input_Files| Input files
- FastNGSadmix#Running_fastNGSadmix| Running fastNGSadmix
- FastNGSadmix#PCA| PCA
- FastNGSadmix#Making_a_reference_panel| Making a reference panel
- FastNGSadmix#Human_reference_panels| Human reference panels
- FastNGSadmix#Citation| Citation
- relateAdmix
- relateAdmix|Relatedness estimation for admixed individuals
- relateAdmix#Installation|Download
- relateAdmix#Run_example | Example
- LDadmix
- R scripts
- Rscripts| various R scripts
- navigation
- mainpage|Software
- http://popgen.dk%7CPopgen.dk
- http://popgen.dk/wiki%7CANGSD
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