NgsAdmix

This will contain the program called NGSadmix, which is a very nice tool for finding admixture. It is based on genotype likelihoods or genotype probabilities. It is a fancy multithreaded c/c++ program

Installation

wget popgen.dk/software/NGSadmix/ngsadmix32.cpp 
g++ ngsadmix32.cpp -O3 -lpthread -lz -o NGSadmix

Input Files

The current input files are the widely used beagle inputfiles, or beagle imputed outputfiles. We recommend ANGSD for easy transformation of Next generation sequencing data to beagle format.

log

• v32 june 25-2013; modified code such that it now compiles on OSX
• v31 june 24-2013; First public version.