NgsAdmix

This will contain the program called NGSadmix, which is a very nice tool for finding admixture. It is based on genotype likelihoods or genotype probabilities. It is a fancy multithreaded c/c++ program

Installation

wget popgen.dk/software/NGSadmix/ngsadmix32.cpp 
g++ ngsadmix32.cpp -O3 -lpthread -lz -o NGSadmix

Input Files

The current input files are the widely used beagle inputfiles, or beagle imputed outputfiles [1]. We recommend ANGSD for easy transformation of Next-generation sequencing data to beagle format.

log

• v32 june 25-2013; modified code such that it now compiles on OSX
• v31 june 24-2013; First public version.