User contributions for Albrecht

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19:5719:57, 4 March 2024 diff hist −18‎ EvalAdmix ‎No edit summary current

12:1012:10, 11 January 2024 diff hist 0‎ N File:EvalAdmix.jpg ‎No edit summary current
12:0912:09, 11 January 2024 diff hist 0‎ EvalAdmix ‎No edit summary

13:3213:32, 24 October 2023 diff hist 0‎ N File:Pcangsd pca.png ‎No edit summary current
13:2613:26, 24 October 2023 diff hist −33‎ PCAngsd ‎No edit summary current
13:2513:25, 24 October 2023 diff hist 0‎ N File:Pcangsd admix3.gif ‎No edit summary current
13:1213:12, 24 October 2023 diff hist +34‎ PCAngsd ‎No edit summary

11:2711:27, 27 December 2022 diff hist +1‎ EvalAdmix ‎ →‎Genotype data
11:2611:26, 27 December 2022 diff hist 0‎ File:EvalAdmixK3.Q.png ‎ Albrecht uploaded a new version of File:EvalAdmixK3.Q.png current
11:2511:25, 27 December 2022 diff hist 0‎ N File:EvalAdmixK3.cor.png ‎No edit summary current
11:2511:25, 27 December 2022 diff hist 0‎ N File:EvalAdmixK3.Q.png ‎No edit summary
11:2511:25, 27 December 2022 diff hist +125‎ EvalAdmix ‎ →‎Genotype data
11:1611:16, 27 December 2022 diff hist −230‎ EvalAdmix ‎ →‎Run command example
11:1311:13, 27 December 2022 diff hist +171‎ EvalAdmix ‎ →‎Genotype data
11:0211:02, 27 December 2022 diff hist +39‎ EvalAdmix ‎ →‎Genotype data
11:0211:02, 27 December 2022 diff hist +5‎ EvalAdmix ‎ →‎Genotype data

18:1018:10, 29 May 2020 diff hist +5‎ PCAngsdTutorial ‎ →‎Admixture based on two PC current
18:0918:09, 29 May 2020 diff hist −4‎ PCAngsdTutorial ‎ →‎Admixture based on 1st two PC
18:0818:08, 29 May 2020 diff hist +23‎ PCAngsdTutorial ‎ →‎Admixture based on 1st two PC
18:0718:07, 29 May 2020 diff hist +23‎ PCAngsdTutorial ‎ →‎Estimating Individual Allele Frequencies
18:0618:06, 29 May 2020 diff hist −1‎ PCAngsdTutorial ‎ →‎Demo 1: Allele Frequencies
18:0418:04, 29 May 2020 diff hist −31‎ PCAngsdTutorial ‎ →‎Download the input and population information files
18:0318:03, 29 May 2020 diff hist −11‎ PCAngsdTutorial ‎ →‎Create directories
18:0218:02, 29 May 2020 diff hist −66‎ PCAngsdTutorial ‎No edit summary
17:5917:59, 29 May 2020 diff hist +148‎ PCAngsd ‎ →‎Quick start
17:5617:56, 29 May 2020 diff hist −151‎ PCAngsd ‎ →‎Output
17:5117:51, 29 May 2020 diff hist −319‎ PCAngsd ‎ →‎Download and Installation
17:5017:50, 29 May 2020 diff hist +114‎ PCAngsd ‎ →‎Overview
17:4917:49, 29 May 2020 diff hist +2,215‎ PCAngsd ‎No edit summary

11:4811:48, 27 April 2020 diff hist +368‎ EMU ‎ →‎Run example
11:3011:30, 27 April 2020 diff hist +112‎ EMU ‎No edit summary

14:3614:36, 24 September 2019 diff hist +3‎ IBSrelate ‎ →‎Examine the results current
14:3614:36, 24 September 2019 diff hist +4‎ IBSrelate ‎ →‎run IBS, this will analyse each pair of individuals
14:3514:35, 24 September 2019 diff hist −1‎ IBSrelate ‎ →‎What data type is required for these analysis?
14:3414:34, 24 September 2019 diff hist +648‎ IBSrelate ‎ →‎Frequently asked Questions
14:2714:27, 24 September 2019 diff hist +638‎ IBSrelate ‎ →‎How will inbreeding affects the estimates produces here?
14:0314:03, 24 September 2019 diff hist −2‎ IBSrelate ‎ →‎How can the quality of the reference genome assembly affect R0, R1, or KING-robust kinship estimates?
14:0314:03, 24 September 2019 diff hist +544‎ IBSrelate ‎ →‎How can reference genome assembly errors affect R0, R1, or KING-robust kinship estimates?
13:5413:54, 24 September 2019 diff hist +1,396‎ IBSrelate ‎ →‎How can reference genome assembly errors affect R0, R1, or KING-robust kinship estimates?
13:3213:32, 24 September 2019 diff hist +293‎ IBSrelate ‎ →‎Can I estimate R0, R1, or KING-robust kinship even if my reference genome is not assembled into chromosomes?
13:2913:29, 24 September 2019 diff hist +6‎ IBSrelate ‎ →‎How can I estimate confidence intervals around my R0, R1, or KING-robust kinship estimates?
13:2913:29, 24 September 2019 diff hist +9‎ IBSrelate ‎ →‎How can I estimate confidence intervals around my R0, R1, or KING-robust kinship estimates?
13:2413:24, 24 September 2019 diff hist +593‎ IBSrelate ‎ →‎How can I estimate confidence intervals around my R0, R1, or KING-robust kinship estimates?
13:1513:15, 24 September 2019 diff hist +139‎ IBSrelate ‎ →‎How can I estimate confidence intervals around my R0, R1, or KING-robust kinship estimates?
13:1413:14, 24 September 2019 diff hist +388‎ IBSrelate ‎ →‎How can I estimate confidence intervals around my R0, R1, or KING-robust kinship estimates?
13:0613:06, 24 September 2019 diff hist +171‎ IBSrelate ‎ →‎How can I estimate confidence intervals around my R0, R1, or KING-robust kinship estimates?
13:0113:01, 24 September 2019 diff hist +1,023‎ IBSrelate ‎ →‎I run out of RAM running IBS or realSFS on my entire data set, what should I do?
11:3411:34, 24 September 2019 diff hist +501‎ IBSrelate ‎No edit summary
11:1311:13, 24 September 2019 diff hist 0‎ IBSrelate ‎ →‎run IBS, this will analyse each pair of individuals
11:1311:13, 24 September 2019 diff hist +203‎ IBSrelate ‎ →‎run IBS, this will analyse each pair of individuals
11:0711:07, 24 September 2019 diff hist +91‎ IBSrelate ‎ →‎run IBS, this will analyse each pair of individuals
11:0511:05, 24 September 2019 diff hist +15‎ IBSrelate ‎ →‎Specify an allele at each site
11:0411:04, 24 September 2019 diff hist +8‎ IBSrelate ‎ →‎Generate a saf (site allele frequency likelihood) file for each individual
11:0411:04, 24 September 2019 diff hist −23‎ IBSrelate ‎ →‎Generate a saf (site allele frequency likelihood) file for each individual
11:0411:04, 24 September 2019 diff hist −1‎ IBSrelate ‎ →‎Generate a saf (site allele frequency likelihood) file for each individual
11:0311:03, 24 September 2019 diff hist −8‎ IBSrelate ‎ →‎Generate a saf (site allele frequency likelihood) file for each individual
11:0311:03, 24 September 2019 diff hist −2‎ IBSrelate ‎ →‎Generate a saf (site allele frequency likelihood) file for each individual
11:0311:03, 24 September 2019 diff hist +1‎ IBSrelate ‎ →‎Generate a saf (site allele frequency likelihood) file for each individual
11:0311:03, 24 September 2019 diff hist +280‎ IBSrelate ‎ →‎Generate a saf (site allele frequency likelihood) file for each individual
10:5710:57, 24 September 2019 diff hist +66‎ IBSrelate ‎No edit summary
10:5010:50, 24 September 2019 diff hist +222‎ IBSrelate ‎ →‎Generate a saf (site allele frequency likelihood) file for each individual
10:4710:47, 24 September 2019 diff hist +156‎ IBSrelate ‎ →‎make a genotype likelihood file (glf) containing all individuals
10:4510:45, 24 September 2019 diff hist +4‎ IBSrelate ‎ →‎IBS Method
10:4410:44, 24 September 2019 diff hist +4‎ IBSrelate ‎ →‎Setup
10:4110:41, 24 September 2019 diff hist +178‎ IBSrelate ‎ →‎Parse the results for a single pair of individuals
10:3710:37, 24 September 2019 diff hist +91‎ IBSrelate ‎ →‎Setup
10:3310:33, 24 September 2019 diff hist −11‎ IBSrelate ‎ →‎Setup
10:3310:33, 24 September 2019 diff hist +119‎ IBSrelate ‎ →‎Setup
10:3110:31, 24 September 2019 diff hist 0‎ IBSrelate ‎ →‎Get the example data
10:3010:30, 24 September 2019 diff hist +29‎ IBSrelate ‎ →‎Setup
10:3010:30, 24 September 2019 diff hist +69‎ IBSrelate ‎ →‎Setup
10:2810:28, 24 September 2019 diff hist −2‎ IBSrelate ‎ →‎Set up shell variables
10:2710:27, 24 September 2019 diff hist +22‎ IBSrelate ‎ →‎Application to the ANGSD example data
10:2710:27, 24 September 2019 diff hist −33‎ IBSrelate ‎No edit summary
10:2610:26, 24 September 2019 diff hist −2‎ IBSrelate ‎No edit summary

15:1815:18, 23 September 2019 diff hist −4‎ IBSrelate ‎No edit summary
15:1815:18, 23 September 2019 diff hist −2,932‎ IBSrelate ‎No edit summary
15:1615:16, 23 September 2019 diff hist +11‎ IBSrelate ‎ →‎Examine the results
15:1515:15, 23 September 2019 diff hist +13‎ IBSrelate ‎ →‎run IBS, this will analyse each pair of individuals
15:1515:15, 23 September 2019 diff hist +13‎ IBSrelate ‎ →‎make a genotype likelihood file (glf) containing all individuals
15:1415:14, 23 September 2019 diff hist +38‎ IBSrelate ‎No edit summary
15:1015:10, 23 September 2019 diff hist +109‎ IBSrelate ‎ →‎Parse the results for a single pair of individuals
15:0815:08, 23 September 2019 diff hist +43‎ IBSrelate ‎ →‎run realSFS on each pair of indiviudals
15:0715:07, 23 September 2019 diff hist +1‎ IBSrelate ‎ →‎Parse the results for a single pair of individuals
15:0715:07, 23 September 2019 diff hist +71‎ IBSrelate ‎ →‎run realSFS on each pair of indiviudals
15:0515:05, 23 September 2019 diff hist +3,173‎ IBSrelate ‎No edit summary
10:4710:47, 23 September 2019 diff hist −1‎ IBSrelate ‎ →‎Demonstration of the IBS and realSFS methods on the angsd example data
10:4710:47, 23 September 2019 diff hist +1‎ IBSrelate ‎ →‎Calculating statistics from the output of IBS and realSFS
10:4610:46, 23 September 2019 diff hist +2‎ m IBSrelate ‎ →‎Calculating statistics from the output of IBS and realSFS
10:4310:43, 23 September 2019 diff hist +21‎ m IBSrelate ‎No edit summary
10:3910:39, 23 September 2019 diff hist +20‎ m IBSrelate ‎No edit summary

13:0513:05, 23 August 2019 diff hist 0‎ PCAngsd ‎No edit summary

09:0009:00, 8 August 2019 diff hist −73‎ PCAngsdv2 ‎ →‎Quick start

15:4415:44, 18 July 2019 diff hist +146‎ EvalAdmix ‎ →‎Quick start
15:4315:43, 18 July 2019 diff hist −616‎ EvalAdmix ‎ →‎Output Files
15:4315:43, 18 July 2019 diff hist +80‎ EvalAdmix ‎ →‎Run command example
15:3915:39, 18 July 2019 diff hist +147‎ EvalAdmix ‎ →‎Run command example
15:3815:38, 18 July 2019 diff hist −43‎ NgsAdmixTutorial ‎ →‎Download
15:3515:35, 18 July 2019 diff hist +667‎ EvalAdmix ‎ →‎Run command example
15:2715:27, 18 July 2019 diff hist +113‎ EvalAdmix ‎ →‎Run command example

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