User contributions for Albrecht
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4 March 2024
- 19:5719:57, 4 March 2024 diff hist −18 EvalAdmix No edit summary current
11 January 2024
- 12:1012:10, 11 January 2024 diff hist 0 N File:EvalAdmix.jpg No edit summary current
- 12:0912:09, 11 January 2024 diff hist 0 EvalAdmix No edit summary
24 October 2023
- 13:3213:32, 24 October 2023 diff hist 0 N File:Pcangsd pca.png No edit summary current
- 13:2613:26, 24 October 2023 diff hist −33 PCAngsd No edit summary current
- 13:2513:25, 24 October 2023 diff hist 0 N File:Pcangsd admix3.gif No edit summary current
- 13:1213:12, 24 October 2023 diff hist +34 PCAngsd No edit summary
27 December 2022
- 11:2711:27, 27 December 2022 diff hist +1 EvalAdmix →Genotype data
- 11:2611:26, 27 December 2022 diff hist 0 File:EvalAdmixK3.Q.png Albrecht uploaded a new version of File:EvalAdmixK3.Q.png current
- 11:2511:25, 27 December 2022 diff hist 0 N File:EvalAdmixK3.cor.png No edit summary current
- 11:2511:25, 27 December 2022 diff hist 0 N File:EvalAdmixK3.Q.png No edit summary
- 11:2511:25, 27 December 2022 diff hist +125 EvalAdmix →Genotype data
- 11:1611:16, 27 December 2022 diff hist −230 EvalAdmix →Run command example
- 11:1311:13, 27 December 2022 diff hist +171 EvalAdmix →Genotype data
- 11:0211:02, 27 December 2022 diff hist +39 EvalAdmix →Genotype data
- 11:0211:02, 27 December 2022 diff hist +5 EvalAdmix →Genotype data
29 May 2020
- 18:1018:10, 29 May 2020 diff hist +5 PCAngsdTutorial →Admixture based on two PC current
- 18:0918:09, 29 May 2020 diff hist −4 PCAngsdTutorial →Admixture based on 1st two PC
- 18:0818:08, 29 May 2020 diff hist +23 PCAngsdTutorial →Admixture based on 1st two PC
- 18:0718:07, 29 May 2020 diff hist +23 PCAngsdTutorial →Estimating Individual Allele Frequencies
- 18:0618:06, 29 May 2020 diff hist −1 PCAngsdTutorial →Demo 1: Allele Frequencies
- 18:0418:04, 29 May 2020 diff hist −31 PCAngsdTutorial →Download the input and population information files
- 18:0318:03, 29 May 2020 diff hist −11 PCAngsdTutorial →Create directories
- 18:0218:02, 29 May 2020 diff hist −66 PCAngsdTutorial No edit summary
- 17:5917:59, 29 May 2020 diff hist +148 PCAngsd →Quick start
- 17:5617:56, 29 May 2020 diff hist −151 PCAngsd →Output
- 17:5117:51, 29 May 2020 diff hist −319 PCAngsd →Download and Installation
- 17:5017:50, 29 May 2020 diff hist +114 PCAngsd →Overview
- 17:4917:49, 29 May 2020 diff hist +2,215 PCAngsd No edit summary
27 April 2020
- 11:4811:48, 27 April 2020 diff hist +368 EMU →Run example
- 11:3011:30, 27 April 2020 diff hist +112 EMU No edit summary
24 September 2019
- 14:3614:36, 24 September 2019 diff hist +3 IBSrelate →Examine the results current
- 14:3614:36, 24 September 2019 diff hist +4 IBSrelate →run IBS, this will analyse each pair of individuals
- 14:3514:35, 24 September 2019 diff hist −1 IBSrelate →What data type is required for these analysis?
- 14:3414:34, 24 September 2019 diff hist +648 IBSrelate →Frequently asked Questions
- 14:2714:27, 24 September 2019 diff hist +638 IBSrelate →How will inbreeding affects the estimates produces here?
- 14:0314:03, 24 September 2019 diff hist −2 IBSrelate →How can the quality of the reference genome assembly affect R0, R1, or KING-robust kinship estimates?
- 14:0314:03, 24 September 2019 diff hist +544 IBSrelate →How can reference genome assembly errors affect R0, R1, or KING-robust kinship estimates?
- 13:5413:54, 24 September 2019 diff hist +1,396 IBSrelate →How can reference genome assembly errors affect R0, R1, or KING-robust kinship estimates?
- 13:3213:32, 24 September 2019 diff hist +293 IBSrelate →Can I estimate R0, R1, or KING-robust kinship even if my reference genome is not assembled into chromosomes?
- 13:2913:29, 24 September 2019 diff hist +6 IBSrelate →How can I estimate confidence intervals around my R0, R1, or KING-robust kinship estimates?
- 13:2913:29, 24 September 2019 diff hist +9 IBSrelate →How can I estimate confidence intervals around my R0, R1, or KING-robust kinship estimates?
- 13:2413:24, 24 September 2019 diff hist +593 IBSrelate →How can I estimate confidence intervals around my R0, R1, or KING-robust kinship estimates?
- 13:1513:15, 24 September 2019 diff hist +139 IBSrelate →How can I estimate confidence intervals around my R0, R1, or KING-robust kinship estimates?
- 13:1413:14, 24 September 2019 diff hist +388 IBSrelate →How can I estimate confidence intervals around my R0, R1, or KING-robust kinship estimates?
- 13:0613:06, 24 September 2019 diff hist +171 IBSrelate →How can I estimate confidence intervals around my R0, R1, or KING-robust kinship estimates?
- 13:0113:01, 24 September 2019 diff hist +1,023 IBSrelate →I run out of RAM running IBS or realSFS on my entire data set, what should I do?
- 11:3411:34, 24 September 2019 diff hist +501 IBSrelate No edit summary
- 11:1311:13, 24 September 2019 diff hist 0 IBSrelate →run IBS, this will analyse each pair of individuals
- 11:1311:13, 24 September 2019 diff hist +203 IBSrelate →run IBS, this will analyse each pair of individuals
- 11:0711:07, 24 September 2019 diff hist +91 IBSrelate →run IBS, this will analyse each pair of individuals
- 11:0511:05, 24 September 2019 diff hist +15 IBSrelate →Specify an allele at each site
- 11:0411:04, 24 September 2019 diff hist +8 IBSrelate →Generate a saf (site allele frequency likelihood) file for each individual
- 11:0411:04, 24 September 2019 diff hist −23 IBSrelate →Generate a saf (site allele frequency likelihood) file for each individual
- 11:0411:04, 24 September 2019 diff hist −1 IBSrelate →Generate a saf (site allele frequency likelihood) file for each individual
- 11:0311:03, 24 September 2019 diff hist −8 IBSrelate →Generate a saf (site allele frequency likelihood) file for each individual
- 11:0311:03, 24 September 2019 diff hist −2 IBSrelate →Generate a saf (site allele frequency likelihood) file for each individual
- 11:0311:03, 24 September 2019 diff hist +1 IBSrelate →Generate a saf (site allele frequency likelihood) file for each individual
- 11:0311:03, 24 September 2019 diff hist +280 IBSrelate →Generate a saf (site allele frequency likelihood) file for each individual
- 10:5710:57, 24 September 2019 diff hist +66 IBSrelate No edit summary
- 10:5010:50, 24 September 2019 diff hist +222 IBSrelate →Generate a saf (site allele frequency likelihood) file for each individual
- 10:4710:47, 24 September 2019 diff hist +156 IBSrelate →make a genotype likelihood file (glf) containing all individuals
- 10:4510:45, 24 September 2019 diff hist +4 IBSrelate →IBS Method
- 10:4410:44, 24 September 2019 diff hist +4 IBSrelate →Setup
- 10:4110:41, 24 September 2019 diff hist +178 IBSrelate →Parse the results for a single pair of individuals
- 10:3710:37, 24 September 2019 diff hist +91 IBSrelate →Setup
- 10:3310:33, 24 September 2019 diff hist −11 IBSrelate →Setup
- 10:3310:33, 24 September 2019 diff hist +119 IBSrelate →Setup
- 10:3110:31, 24 September 2019 diff hist 0 IBSrelate →Get the example data
- 10:3010:30, 24 September 2019 diff hist +29 IBSrelate →Setup
- 10:3010:30, 24 September 2019 diff hist +69 IBSrelate →Setup
- 10:2810:28, 24 September 2019 diff hist −2 IBSrelate →Set up shell variables
- 10:2710:27, 24 September 2019 diff hist +22 IBSrelate →Application to the ANGSD example data
- 10:2710:27, 24 September 2019 diff hist −33 IBSrelate No edit summary
- 10:2610:26, 24 September 2019 diff hist −2 IBSrelate No edit summary
23 September 2019
- 15:1815:18, 23 September 2019 diff hist −4 IBSrelate No edit summary
- 15:1815:18, 23 September 2019 diff hist −2,932 IBSrelate No edit summary
- 15:1615:16, 23 September 2019 diff hist +11 IBSrelate →Examine the results
- 15:1515:15, 23 September 2019 diff hist +13 IBSrelate →run IBS, this will analyse each pair of individuals
- 15:1515:15, 23 September 2019 diff hist +13 IBSrelate →make a genotype likelihood file (glf) containing all individuals
- 15:1415:14, 23 September 2019 diff hist +38 IBSrelate No edit summary
- 15:1015:10, 23 September 2019 diff hist +109 IBSrelate →Parse the results for a single pair of individuals
- 15:0815:08, 23 September 2019 diff hist +43 IBSrelate →run realSFS on each pair of indiviudals
- 15:0715:07, 23 September 2019 diff hist +1 IBSrelate →Parse the results for a single pair of individuals
- 15:0715:07, 23 September 2019 diff hist +71 IBSrelate →run realSFS on each pair of indiviudals
- 15:0515:05, 23 September 2019 diff hist +3,173 IBSrelate No edit summary
- 10:4710:47, 23 September 2019 diff hist −1 IBSrelate →Demonstration of the IBS and realSFS methods on the angsd example data
- 10:4710:47, 23 September 2019 diff hist +1 IBSrelate →Calculating statistics from the output of IBS and realSFS
- 10:4610:46, 23 September 2019 diff hist +2 m IBSrelate →Calculating statistics from the output of IBS and realSFS
- 10:4310:43, 23 September 2019 diff hist +21 m IBSrelate No edit summary
- 10:3910:39, 23 September 2019 diff hist +20 m IBSrelate No edit summary
23 August 2019
- 13:0513:05, 23 August 2019 diff hist 0 PCAngsd No edit summary
8 August 2019
- 09:0009:00, 8 August 2019 diff hist −73 PCAngsdv2 →Quick start
18 July 2019
- 15:4415:44, 18 July 2019 diff hist +146 EvalAdmix →Quick start
- 15:4315:43, 18 July 2019 diff hist −616 EvalAdmix →Output Files
- 15:4315:43, 18 July 2019 diff hist +80 EvalAdmix →Run command example
- 15:3915:39, 18 July 2019 diff hist +147 EvalAdmix →Run command example
- 15:3815:38, 18 July 2019 diff hist −43 NgsAdmixTutorial →Download
- 15:3515:35, 18 July 2019 diff hist +667 EvalAdmix →Run command example
- 15:2715:27, 18 July 2019 diff hist +113 EvalAdmix →Run command example
- 15:2515:25, 18 July 2019 diff hist +51 EvalAdmix →Input File
- 15:2515:25, 18 July 2019 diff hist −2 EvalAdmix →Parameters
- 15:2415:24, 18 July 2019 diff hist −861 EvalAdmix →Parameters
- 15:2315:23, 18 July 2019 diff hist +5,089 N EvalAdmix Created page with "evalAdmix allows to evaluate the results of an admixture analysis. It takes as input the genotype data (either called genotypes in plink files or genotype likelihoods beagle f..."
- 15:1915:19, 18 July 2019 diff hist −35 MediaWiki:Sidebar No edit summary current
- 15:1915:19, 18 July 2019 diff hist +212 MediaWiki:Sidebar No edit summary
12 July 2019
- 11:4011:40, 12 July 2019 diff hist +19 MediaWiki:Sidebar No edit summary
- 11:3511:35, 12 July 2019 diff hist +13 NgsAdmixTutorial →Example of NGSadmix - Simple
- 11:3311:33, 12 July 2019 diff hist −2 NgsAdmixTutorial No edit summary
- 11:3111:31, 12 July 2019 diff hist +24 NgsAdmixTutorial →Create the the beagle genotype likelihood input file using ANGSD
- 11:3011:30, 12 July 2019 diff hist +1 NgsAdmixTutorial →Create the the beagle genotype likelihood input file using ANGSD
- 11:3011:30, 12 July 2019 diff hist −1 NgsAdmixTutorial →Create the the beagle genotype likelihood input file using ANGSD
- 11:3011:30, 12 July 2019 diff hist −1 NgsAdmixTutorial →Create the the beagle genotype likelihood input file using ANGSD
- 11:3011:30, 12 July 2019 diff hist +7 NgsAdmixTutorial →Create the the beagle genotype likelihood input file using ANGSD
- 11:2911:29, 12 July 2019 diff hist +127 NgsAdmixTutorial →Example of NGSadmix - Simple
- 11:2311:23, 12 July 2019 diff hist +27 NgsAdmixTutorial →Example of NGSadmix with admixed populations
- 11:1111:11, 12 July 2019 diff hist +1,037 NgsAdmixTutorial →Example of NGSadmix - Simple
- 10:4010:40, 12 July 2019 diff hist −11 NgsAdmixTutorial →Example of NGSadmix with admixed populations
- 10:3910:39, 12 July 2019 diff hist +1 NgsAdmixTutorial →Example of NGSadmix with admixed populations
- 10:3810:38, 12 July 2019 diff hist +2 NgsAdmixTutorial →Example of NGSadmix with admixed populations
- 10:3610:36, 12 July 2019 diff hist +63 NgsAdmixTutorial No edit summary
- 10:3110:31, 12 July 2019 diff hist −107 NgsAdmixTutorial No edit summary
- 10:3010:30, 12 July 2019 diff hist +96 NgsAdmixTutorial No edit summary
- 10:2610:26, 12 July 2019 diff hist +65 NgsAdmixTutorial No edit summary
- 10:2410:24, 12 July 2019 diff hist +1 NgsAdmixTutorial No edit summary
- 10:2210:22, 12 July 2019 diff hist 0 NgsAdmixTutorial No edit summary
- 10:2210:22, 12 July 2019 diff hist +1 NgsAdmixTutorial No edit summary
- 10:2110:21, 12 July 2019 diff hist −1 NgsAdmixTutorial No edit summary
- 10:2110:21, 12 July 2019 diff hist +14 NgsAdmixTutorial →Example of NGSadmix - Simple
- 10:2010:20, 12 July 2019 diff hist +64 NgsAdmixTutorial →Example of NGSadmix - Simple
- 10:1810:18, 12 July 2019 diff hist −304 NgsAdmixTutorial No edit summary
- 10:0210:02, 12 July 2019 diff hist −4 NgsAdmixTutorial No edit summary
- 09:5709:57, 12 July 2019 diff hist −126 NgsAdmix No edit summary
- 09:5309:53, 12 July 2019 diff hist +13 NgsAdmix →Installation
- 09:5209:52, 12 July 2019 diff hist −153 NgsAdmix No edit summary
- 09:5009:50, 12 July 2019 diff hist −29,350 NgsAdmix No edit summary
- 09:4909:49, 12 July 2019 diff hist +503 NgsAdmixv2 →Input File
- 09:3609:36, 12 July 2019 diff hist +12 NgsAdmixv2 →Parameters
- 09:3509:35, 12 July 2019 diff hist −107 NgsAdmixv2 →Parameters
- 09:3509:35, 12 July 2019 diff hist +177 NgsAdmixv2 →Quick start
- 09:3209:32, 12 July 2019 diff hist +75 NgsAdmixv2 No edit summary
- 09:3009:30, 12 July 2019 diff hist −82 NgsAdmixv2 →NGSadmix Independent Installation
8 July 2019
- 15:3915:39, 8 July 2019 diff hist −532 PCAngsd →Download
21 May 2019
- 16:3416:34, 21 May 2019 diff hist +249 IBSrelate →Example Usage
20 May 2019
- 17:2017:20, 20 May 2019 diff hist −15 IBSrelate No edit summary
- 15:5715:57, 20 May 2019 diff hist 0 IBSrelate →Example Usage
- 15:5715:57, 20 May 2019 diff hist +1 IBSrelate →run IBS
- 15:5615:56, 20 May 2019 diff hist 0 IBSrelate →IBS method
- 15:5315:53, 20 May 2019 diff hist −1 IBSrelate →Example Usage
- 15:5215:52, 20 May 2019 diff hist +6 IBSrelate →run realSFS for each pair of individuals
- 15:2915:29, 20 May 2019 diff hist +4 IBSrelate No edit summary
- 15:2815:28, 20 May 2019 diff hist +699 IBSrelate No edit summary
- 15:1215:12, 20 May 2019 diff hist +81 IBSrelate →Example Usage
- 15:1115:11, 20 May 2019 diff hist 0 IBSrelate →make *.saf files
- 15:1015:10, 20 May 2019 diff hist +307 IBSrelate →Example Usage
- 15:0315:03, 20 May 2019 diff hist +19 IBSrelate →make *.saf files
- 15:0115:01, 20 May 2019 diff hist +148 IBSrelate No edit summary
- 14:3814:38, 20 May 2019 diff hist +167 IBSrelate No edit summary
- 14:3314:33, 20 May 2019 diff hist +433 IBSrelate No edit summary
- 14:1514:15, 20 May 2019 diff hist +34 IBSrelate No edit summary
- 12:3212:32, 20 May 2019 diff hist +44 IBSrelate. No edit summary current
- 12:2612:26, 20 May 2019 diff hist −40 IBSrelate. No edit summary
- 12:2612:26, 20 May 2019 diff hist +59 N IBSrelate. Created page with "#REDIRECT http://www.popgen.dk/software/index.php/IBSrelate"
28 January 2019
- 17:5417:54, 28 January 2019 diff hist +2 MediaWiki:Sidebar No edit summary
4 December 2018
- 19:2319:23, 4 December 2018 diff hist +97 IBSrelate →Example Usage
- 19:2219:22, 4 December 2018 diff hist +441 IBSrelate No edit summary
- 19:2119:21, 4 December 2018 diff hist +60 IBSrelate No edit summary
- 19:1019:10, 4 December 2018 diff hist +558 IBSrelate No edit summary
- 18:4918:49, 4 December 2018 diff hist +2 IBSrelate No edit summary
- 18:4918:49, 4 December 2018 diff hist +9 IBSrelate →Usage
- 18:4918:49, 4 December 2018 diff hist −13 IBSrelate →Usage
- 18:4718:47, 4 December 2018 diff hist +1,355 IBSrelate No edit summary
- 18:3218:32, 4 December 2018 diff hist +13 IBSrelate No edit summary
- 18:3118:31, 4 December 2018 diff hist +181 IBSrelate No edit summary
- 18:3018:30, 4 December 2018 diff hist −42 IBSrelate No edit summary
- 18:2918:29, 4 December 2018 diff hist +1 IBSrelate No edit summary
- 18:2918:29, 4 December 2018 diff hist +541 IBSrelate No edit summary
- 18:2518:25, 4 December 2018 diff hist +140 N IBSrelate Created page with "This page contains information about the program IBSrelate. Please see our paper in Molecular Ecology at: https://doi.org/10.1111/mec.14954"
- 18:2318:23, 4 December 2018 diff hist +18 Main Page No edit summary
1 October 2018
15 August 2018
- 14:2714:27, 15 August 2018 diff hist +26 MediaWiki:Sidebar No edit summary
- 14:2614:26, 15 August 2018 diff hist +141 MediaWiki:Sidebar No edit summary
- 14:2314:23, 15 August 2018 diff hist +20 AsaMap →Example
- 14:2214:22, 15 August 2018 diff hist −8 MediaWiki:Sidebar No edit summary
- 14:2014:20, 15 August 2018 diff hist +52 AsaMap No edit summary
- 14:1914:19, 15 August 2018 diff hist +17 N AsaMap Created page with "This is some text"
- 14:1814:18, 15 August 2018 diff hist 0 MediaWiki:Sidebar No edit summary
- 14:1714:17, 15 August 2018 diff hist +137 MediaWiki:Sidebar No edit summary
9 March 2018
- 12:0112:01, 9 March 2018 diff hist −1 RelateAdmix →Options current
- 12:0112:01, 9 March 2018 diff hist +453 RelateAdmix →Options
- 11:5611:56, 9 March 2018 diff hist +385 RelateAdmix →Run example using C
22 February 2018
- 16:5716:57, 22 February 2018 diff hist +501 RelateAdmix →Citing and references
- 16:5516:55, 22 February 2018 diff hist +27 RelateAdmix No edit summary
4 September 2017
- 09:2809:28, 4 September 2017 diff hist +44 CATS →Download and installation current
4 August 2017
- 09:1809:18, 4 August 2017 diff hist 0 RelateAdmix →Installation of C/C++ program
- 09:1709:17, 4 August 2017 diff hist 0 RelateAdmix →Installation of C/C++ program
18 July 2017
- 14:2114:21, 18 July 2017 diff hist +65 MediaWiki:Sidebar No edit summary
14 July 2017
- 11:2911:29, 14 July 2017 diff hist +35 RelateAdmix →Installation of R package
- 11:0511:05, 14 July 2017 diff hist +2 RelateAdmix →Installation of R package
- 10:3510:35, 14 July 2017 diff hist +210 RelateAdmix No edit summary
- 09:5109:51, 14 July 2017 diff hist +9 RelateAdmix No edit summary
3 May 2017
- 17:2817:28, 3 May 2017 diff hist +2 FastNgsAdmix No edit summary current
- 17:2817:28, 3 May 2017 diff hist +14 N FastNgsAdmix Created page with "[FastNGSadmix]"
- 17:2717:27, 3 May 2017 diff hist 0 m FastNgsAdmixOld Albrecht moved page FastNgsAdmix to FastNgsAdmixOld without leaving a redirect: obsolute current
7 March 2017
- 17:5417:54, 7 March 2017 diff hist +192 FastNGSadmix →Making a reference panel with ADMIXTURE
- 17:5117:51, 7 March 2017 diff hist −15 FastNGSadmix →Making a reference panel with ADMIXTURE
- 17:3717:37, 7 March 2017 diff hist +58 FastNGSadmix →Quick start
6 March 2017
- 13:5213:52, 6 March 2017 diff hist +24 FastNGSadmix →Quick start
- 13:5113:51, 6 March 2017 diff hist +182 MediaWiki:Sidebar No edit summary
3 March 2017
- 16:2716:27, 3 March 2017 diff hist +736 FastNGSadmix →Human reference panels
- 16:2616:26, 3 March 2017 diff hist −697 FastNGSadmix →Making a reference panel
- 16:2016:20, 3 March 2017 diff hist +126 FastNGSadmix →Quick start
24 February 2017
- 12:0212:02, 24 February 2017 diff hist −6 FastNGSadmix →Pre made reference panels
- 12:0212:02, 24 February 2017 diff hist +31 FastNGSadmix No edit summary
- 11:5911:59, 24 February 2017 diff hist +118 FastNGSadmix →Running FastNGSadmix
- 11:2611:26, 24 February 2017 diff hist −615 FastNGSadmix No edit summary
- 10:5710:57, 24 February 2017 diff hist +447 FastNGSadmix →Quick start
- 10:4010:40, 24 February 2017 diff hist +159 FastNGSadmix →Quick start
- 10:3910:39, 24 February 2017 diff hist +160 FastNGSadmix No edit summary
- 10:3810:38, 24 February 2017 diff hist +83 FastNGSadmix →Running FastNGSadmix
- 10:3510:35, 24 February 2017 diff hist −13 FastNGSadmix No edit summary
- 10:3510:35, 24 February 2017 diff hist +30 FastNGSadmix No edit summary
- 10:3210:32, 24 February 2017 diff hist −41 FastNGSadmix →PCA
- 10:3010:30, 24 February 2017 diff hist −4 FastNGSadmix No edit summary
- 10:2910:29, 24 February 2017 diff hist +128 FastNGSadmix No edit summary
- 10:2310:23, 24 February 2017 diff hist +453 FastNGSadmix No edit summary
23 February 2017
- 14:4114:41, 23 February 2017 diff hist +8 FastNGSadmix No edit summary
- 14:3814:38, 23 February 2017 diff hist +23 FastNGSadmix No edit summary
- 14:3214:32, 23 February 2017 diff hist +93 FastNGSadmix No edit summary
- 14:3114:31, 23 February 2017 diff hist +30 FastNGSadmix No edit summary
22 February 2017
- 10:3710:37, 22 February 2017 diff hist −20 MediaWiki:Sidebar No edit summary
- 10:3610:36, 22 February 2017 diff hist 0 MediaWiki:Sidebar No edit summary
- 10:3010:30, 22 February 2017 diff hist −32 MediaWiki:Sidebar No edit summary
9 November 2016
- 20:3320:33, 9 November 2016 diff hist +45 NgsAdmix No edit summary
5 July 2016
- 11:0211:02, 5 July 2016 diff hist +14 FastNgsAdmixOld No edit summary
4 April 2016
- 10:0610:06, 4 April 2016 diff hist 0 RelateAdmix →Run example using C
- 10:0510:05, 4 April 2016 diff hist +53 RelateAdmix →Run example using C
- 09:5909:59, 4 April 2016 diff hist +9 RelateAdmix →Installation - Linux/MAC
- 09:5809:58, 4 April 2016 diff hist +12 RelateAdmix →Installation
- 09:5809:58, 4 April 2016 diff hist +49 RelateAdmix →Installation of R package
- 09:5709:57, 4 April 2016 diff hist +373 RelateAdmix →Installation of R package
4 February 2016
- 15:0815:08, 4 February 2016 diff hist 0 FastNgsAdmixOld No edit summary
4 January 2016
- 17:2017:20, 4 January 2016 diff hist +89 NgsAdmix No edit summary
- 17:1817:18, 4 January 2016 diff hist +92 NgsAdmix →Input Files
6 August 2015
- 18:5618:56, 6 August 2015 diff hist −23 CATS →heatmap of power
- 18:5018:50, 6 August 2015 diff hist 0 CATS →run in R
- 18:4918:49, 6 August 2015 diff hist −44 CATS No edit summary
- 18:4018:40, 6 August 2015 diff hist +217 CATS No edit summary
- 18:3818:38, 6 August 2015 diff hist −5 CATS →Download and installation
- 18:1018:10, 6 August 2015 diff hist +34 Relate →table 1 current
- 18:0518:05, 6 August 2015 diff hist −907 Relate →Download and Installation
12 March 2015
- 15:2515:25, 12 March 2015 diff hist +30 Rscripts →Fst current
- 15:2315:23, 12 March 2015 diff hist +2 Rscripts →Fst
- 15:2315:23, 12 March 2015 diff hist +89 Rscripts →Fst
13 February 2015
- 10:3510:35, 13 February 2015 diff hist 0 Rscripts →PCA/Eigensoft/Eigenstrat
- 10:3410:34, 13 February 2015 diff hist −47 Rscripts →PCA/Eigensoft/Eigenstrat
- 10:3010:30, 13 February 2015 diff hist 0 Rscripts →PCA/Eigensoft/Eigenstrat
- 10:2210:22, 13 February 2015 diff hist +16 Rscripts No edit summary
- 10:1710:17, 13 February 2015 diff hist +90 Rscripts →PCA/Eigensoft/Eigenstrat
10 February 2015
- 21:3221:32, 10 February 2015 diff hist +1 Relate No edit summary
- 18:4718:47, 10 February 2015 diff hist +1 Relate No edit summary
15 December 2014
- 21:5721:57, 15 December 2014 diff hist +246 RelateAdmix No edit summary
24 September 2014
- 15:0215:02, 24 September 2014 diff hist +2 Intern →liftover a plink file current
- 14:5514:55, 24 September 2014 diff hist +1 Intern →liftover a plink file
18 September 2014
- 11:2111:21, 18 September 2014 diff hist −134 Intern →liftover a plink file
11 September 2014
- 15:4515:45, 11 September 2014 diff hist +190 MediaWiki:Sidebar No edit summary
3 September 2014
- 09:4409:44, 3 September 2014 diff hist +104 RelateAdmix No edit summary
3 July 2014
- 17:1917:19, 3 July 2014 diff hist +426 Intern →ieatgor
20 March 2014
- 16:0116:01, 20 March 2014 diff hist 0 Intern No edit summary
- 16:0016:00, 20 March 2014 diff hist +1 Intern No edit summary
- 16:0016:00, 20 March 2014 diff hist −109 Intern →plot LD region from plink file
19 March 2014
- 17:2817:28, 19 March 2014 diff hist +24 Intern →R function
- 17:2717:27, 19 March 2014 diff hist −24 Intern →R function
- 17:1617:16, 19 March 2014 diff hist −1 Intern →R function
- 17:1317:13, 19 March 2014 diff hist +1,022 Intern →plot LD region from plink file
- 17:1117:11, 19 March 2014 diff hist −689 Intern →Usage
- 17:0717:07, 19 March 2014 diff hist −196 Intern No edit summary
- 17:0717:07, 19 March 2014 diff hist 0 Intern →bambi/bammer
- 17:0617:06, 19 March 2014 diff hist +1 Intern No edit summary
- 17:0517:05, 19 March 2014 diff hist −238 RefFinder →Stand alone
- 17:0417:04, 19 March 2014 diff hist −682 RefFinder No edit summary
- 17:0117:01, 19 March 2014 diff hist +8,812 RefFinder →Example
- 16:5916:59, 19 March 2014 diff hist +9 Intern →Other stuff
- 16:5716:57, 19 March 2014 diff hist +32 Intern →RefFinder
- 16:5516:55, 19 March 2014 diff hist +9,862 Intern No edit summary
- 16:4016:40, 19 March 2014 diff hist +348 Intern No edit summary
- 16:3616:36, 19 March 2014 diff hist +17 N Intern Created page with "=Secret software="
4 March 2014
- 11:3511:35, 4 March 2014 diff hist +74 RelateAdmix No edit summary
19 February 2014
- 13:5813:58, 19 February 2014 diff hist +513 RelateAdmix No edit summary
- 13:5513:55, 19 February 2014 diff hist +100 RelateAdmix →Installation
- 13:5413:54, 19 February 2014 diff hist +51 RelateAdmix →Brief description
- 13:5313:53, 19 February 2014 diff hist +152 RelateAdmix No edit summary
- 13:4913:49, 19 February 2014 diff hist +93 RelateAdmix →change log
- 13:4813:48, 19 February 2014 diff hist 0 RelateAdmix No edit summary
5 February 2014
- 12:1012:10, 5 February 2014 diff hist +14 Relate →table 1
- 11:5611:56, 5 February 2014 diff hist +37 Relate →table 1
- 11:5511:55, 5 February 2014 diff hist +39 Relate →table 1
- 11:4511:45, 5 February 2014 diff hist +341 Relate →table 1
- 11:3911:39, 5 February 2014 diff hist +57 Relate →table 1
- 11:3811:38, 5 February 2014 diff hist +16 Relate →table 1
- 11:3511:35, 5 February 2014 diff hist +191 Relate No edit summary
3 December 2013
- 16:0216:02, 3 December 2013 diff hist +83 RelateAdmix →change log
- 16:0216:02, 3 December 2013 diff hist −1 RelateAdmix →Installation of R package
20 September 2013
- 13:4513:45, 20 September 2013 diff hist +43 RelateAdmix No edit summary
21 August 2013
- 17:1817:18, 21 August 2013 diff hist +11 RelateAdmix →Installation
- 16:5316:53, 21 August 2013 diff hist +6 RelateAdmix →Run example using C
- 16:5316:53, 21 August 2013 diff hist 0 N File:RelAd.png No edit summary current
- 16:5216:52, 21 August 2013 diff hist +18 RelateAdmix →Run example using C
- 16:5116:51, 21 August 2013 diff hist +169 RelateAdmix →Run example using C
- 16:5016:50, 21 August 2013 diff hist +1 RelateAdmix →input file
- 16:5016:50, 21 August 2013 diff hist +948 RelateAdmix →output file
- 16:3716:37, 21 August 2013 diff hist +121 RelateAdmix →Run example using C
- 15:4715:47, 21 August 2013 diff hist +1,006 RelateAdmix →Run example using C
- 13:3313:33, 21 August 2013 diff hist +215 RelateAdmix →Run example using C
- 13:1913:19, 21 August 2013 diff hist 0 AdmixRelate →Installation of R package current
- 13:1913:19, 21 August 2013 diff hist 0 AdmixRelate →Installation of R package
- 13:1913:19, 21 August 2013 diff hist +11 AdmixRelate →Download
15 August 2013
- 12:3312:33, 15 August 2013 diff hist +3,260 Rscripts No edit summary
- 11:5211:52, 15 August 2013 diff hist +813 N RelateAdmix Created page with "Software for inferring relatedness even if the individuals are admixed. To infer the relatedness you will need to known the individuals admixture proportions and the allele fr..."
- 11:5211:52, 15 August 2013 diff hist 0 MediaWiki:Sidebar No edit summary
- 11:5111:51, 15 August 2013 diff hist +93 Rscripts No edit summary
- 11:5011:50, 15 August 2013 diff hist +59 N Rscripts Created page with " = PCA/Eigensoft/Eigenstrat = = Fst = = LD pruning in R ="
- 11:4911:49, 15 August 2013 diff hist +43 MediaWiki:Sidebar No edit summary
- 11:4311:43, 15 August 2013 diff hist +5 Main Page →Relate
- 11:4311:43, 15 August 2013 diff hist +339 Main Page →CATS
- 11:3811:38, 15 August 2013 diff hist +8 Main Page →Relate
- 11:3811:38, 15 August 2013 diff hist +9 Main Page →NgsAdmix
- 11:3711:37, 15 August 2013 diff hist +63 Main Page No edit summary
- 11:3611:36, 15 August 2013 diff hist +21 Main Page No edit summary
- 11:3511:35, 15 August 2013 diff hist +424 Main Page →Relate
- 11:3311:33, 15 August 2013 diff hist +112 Main Page →Relate
- 11:3311:33, 15 August 2013 diff hist −3 Main Page →NgsAdmix
- 11:3211:32, 15 August 2013 diff hist +294 Main Page →NgsAdmix
- 11:3111:31, 15 August 2013 diff hist −5 Main Page →[Relate Relate]
- 11:3011:30, 15 August 2013 diff hist +53 NgsAdmix No edit summary
- 11:2811:28, 15 August 2013 diff hist +11 Main Page →NgsAdmix
- 11:2711:27, 15 August 2013 diff hist 0 Main Page →NgsAdmix
- 11:2711:27, 15 August 2013 diff hist 0 Main Page →NgsAdmix
- 11:2611:26, 15 August 2013 diff hist 0 File:NgsAdmix.png Albrecht uploaded a new version of "File:NgsAdmix.png" current
- 11:2511:25, 15 August 2013 diff hist 0 N File:NgsAdmix.png No edit summary
- 11:2411:24, 15 August 2013 diff hist +18 Main Page →NgsAdmix
- 11:1411:14, 15 August 2013 diff hist +59 Main Page →[NGSadmix]
- 11:0611:06, 15 August 2013 diff hist +5 Main Page No edit summary
- 11:0411:04, 15 August 2013 diff hist +414 Main Page No edit summary
14 August 2013
- 17:4117:41, 14 August 2013 diff hist 0 AdmixRelate →Run example using R
- 17:3817:38, 14 August 2013 diff hist +271 AdmixRelate →Run example
- 17:2817:28, 14 August 2013 diff hist +107 AdmixRelate →Installation
- 17:2717:27, 14 August 2013 diff hist +20 AdmixRelate →Installation
- 17:1717:17, 14 August 2013 diff hist +230 AdmixRelate No edit summary
- 17:1517:15, 14 August 2013 diff hist −134 Main Page No edit summary
- 17:1317:13, 14 August 2013 diff hist −48 Main Page No edit summary
- 17:1017:10, 14 August 2013 diff hist +141 N AdmixRelate Created page with "=Installation= <pre> wget popgen.dk/software/NGSadmix/ngsadmix32.cpp g++ ngsadmix32.cpp -O3 -lpthread -lz -o NGSadmix </pre> =Run example="
- 17:0917:09, 14 August 2013 diff hist +62 MediaWiki:Sidebar No edit summary
- 17:0717:07, 14 August 2013 diff hist +73 MediaWiki:Sidebar No edit summary
5 August 2013
- 16:0416:04, 5 August 2013 diff hist +2,002 N BAMSE Created page with "BAMSE is a software for performing association studies of multiple SNPs and environmental factors. We have developed a method based on Bayesian statistics that can model inter..." current
- 16:0016:00, 5 August 2013 diff hist +48 MediaWiki:Sidebar No edit summary
- 15:5615:56, 5 August 2013 diff hist +547 CATS →Download and installation
- 15:5315:53, 5 August 2013 diff hist +5 CATS →plot examples
- 15:5215:52, 5 August 2013 diff hist +1 CATS →Which design is better
- 15:5115:51, 5 August 2013 diff hist 0 N File:CatsFig4.png No edit summary current
- 15:5115:51, 5 August 2013 diff hist 0 N File:CatsFig3.png No edit summary current
- 15:5015:50, 5 August 2013 diff hist 0 N File:CatsFig2.png No edit summary current
- 15:5015:50, 5 August 2013 diff hist +2,035 CATS →plot examples
- 15:4715:47, 5 August 2013 diff hist 0 CATS →plot examples
- 15:4515:45, 5 August 2013 diff hist 0 N File:CatsFig1.png No edit summary current
- 15:4515:45, 5 August 2013 diff hist +1 CATS →Simple power plot
- 15:4415:44, 5 August 2013 diff hist +27 CATS →plot examples
- 15:3015:30, 5 August 2013 diff hist +1 CATS →Simple power plot =
- 15:2415:24, 5 August 2013 diff hist +494 CATS No edit summary
- 14:5914:59, 5 August 2013 diff hist +148 CATS →Download and installation
- 14:5214:52, 5 August 2013 diff hist +3 CATS No edit summary
- 14:5214:52, 5 August 2013 diff hist +84 CATS No edit summary
- 14:4614:46, 5 August 2013 diff hist +252 N CATS Created page with "R package for power estimation for a two-stage genome-wide association design. This is a modification of the code from Skol et al 2006, nat genet. so that the relative risk, c..."
- 14:4614:46, 5 August 2013 diff hist +33 MediaWiki:Sidebar No edit summary
17 July 2013
- 17:4817:48, 17 July 2013 diff hist −4 Relate →Download and Installation
- 17:4817:48, 17 July 2013 diff hist 0 Relate →Download and Installation
- 17:4717:47, 17 July 2013 diff hist −4 Relate →Manual
- 16:3616:36, 17 July 2013 diff hist +53 NgsAdmix →Run example
- 16:3116:31, 17 July 2013 diff hist 0 N File:NGSadmixEx2.png No edit summary current
- 16:3016:30, 17 July 2013 diff hist 0 N File:NGSadmixEx1.png No edit summary current
- 16:2616:26, 17 July 2013 diff hist +414 NgsAdmix →Plot results
- 16:2016:20, 17 July 2013 diff hist +155 NgsAdmix →Run example
- 15:3815:38, 17 July 2013 diff hist −10 NgsAdmix →Plot results
- 15:3515:35, 17 July 2013 diff hist +122 NgsAdmix →qopt file
- 15:3415:34, 17 July 2013 diff hist +23 NgsAdmix →Allele frequency ouput (.fopt)
- 15:3315:33, 17 July 2013 diff hist +107 NgsAdmix →fopt file
- 15:3015:30, 17 July 2013 diff hist −1 NgsAdmix →fopt file
- 15:2815:28, 17 July 2013 diff hist −1 NgsAdmix →Input Files
- 15:2715:27, 17 July 2013 diff hist +2 NgsAdmix →Input Files
- 15:2715:27, 17 July 2013 diff hist +49 NgsAdmix →Input Files
- 15:2615:26, 17 July 2013 diff hist +259 NgsAdmix →Input Files
- 15:2415:24, 17 July 2013 diff hist −105 NgsAdmix →Input Files
- 15:2215:22, 17 July 2013 diff hist −140 NgsAdmix →Input Files
- 15:1915:19, 17 July 2013 diff hist +1,127 NgsAdmix →Input Files
- 15:1615:16, 17 July 2013 diff hist +20 NgsAdmix →Input Files
- 15:1515:15, 17 July 2013 diff hist +31 NgsAdmix →Run example
- 15:1415:14, 17 July 2013 diff hist −6 NgsAdmix →Options
- 15:1315:13, 17 July 2013 diff hist 0 NgsAdmix →Run example
- 15:1315:13, 17 July 2013 diff hist −2 NgsAdmix →Run example
- 15:1215:12, 17 July 2013 diff hist +57 NgsAdmix →Run example
25 June 2013
- 15:5715:57, 25 June 2013 diff hist +31 MediaWiki:Sidebar No edit summary
- 14:5814:58, 25 June 2013 diff hist +31 MediaWiki:Sidebar No edit summary
- 14:5714:57, 25 June 2013 diff hist +17 MediaWiki:Sidebar No edit summary
- 14:5514:55, 25 June 2013 diff hist −136 MediaWiki:Sidebar No edit summary
- 13:1513:15, 25 June 2013 diff hist −19 NgsAdmix →Input Files
- 13:0813:08, 25 June 2013 diff hist +155 MediaWiki:Sidebar No edit summary
- 13:0613:06, 25 June 2013 diff hist +12 NgsAdmix No edit summary
- 13:0313:03, 25 June 2013 diff hist +24 MediaWiki:Sidebar No edit summary
19 June 2013
- 21:0721:07, 19 June 2013 diff hist +74 Relate →Download and Installation
- 21:0521:05, 19 June 2013 diff hist +70 Relate →Manual
- 21:0521:05, 19 June 2013 diff hist −15 Relate →Download and Installation
- 21:0221:02, 19 June 2013 diff hist +4 Relate →Manual
- 21:0121:01, 19 June 2013 diff hist +10 Relate →Citation
- 21:0021:00, 19 June 2013 diff hist +3 Relate →Citation
- 20:5920:59, 19 June 2013 diff hist +429 Relate →Citation
- 20:4720:47, 19 June 2013 diff hist −110 Relate →Change log
- 20:4220:42, 19 June 2013 diff hist +45 Relate →Method
- 20:3720:37, 19 June 2013 diff hist −34 Relate →Change log
- 20:3520:35, 19 June 2013 diff hist +54 Relate →Change log
- 20:2520:25, 19 June 2013 diff hist +46 Relate →Method
- 20:1620:16, 19 June 2013 diff hist 0 N File:Relate.png No edit summary current
- 20:0320:03, 19 June 2013 diff hist +16 Relate →Relate
- 20:0220:02, 19 June 2013 diff hist +81 MediaWiki:Sidebar No edit summary
- 20:0020:00, 19 June 2013 diff hist +3,999 N Relate Created page with "= Relate = This method estimates the probability of sharing alleles identity by descent (IBD) across the genome and can also be used for mapping disease loci using distan..."
- 19:5619:56, 19 June 2013 diff hist +73 MediaWiki:Sidebar No edit summary
- 19:5319:53, 19 June 2013 diff hist +597 ANGSD No edit summary
- 19:5219:52, 19 June 2013 diff hist +329 ANGSD →Analysis of Next Generation Sequencing Data
- 19:3819:38, 19 June 2013 diff hist +3 ANGSD No edit summary
- 19:3719:37, 19 June 2013 diff hist +235 N ANGSD Created page with "Analysis of Next Generation Sequencing Data. This is a general purpuse software for analysis of next generation sequencing data including QC, Association and population geneti..."
- 19:3619:36, 19 June 2013 diff hist 0 MediaWiki:Sidebar No edit summary
- 19:2519:25, 19 June 2013 diff hist +8 MediaWiki:Sidebar No edit summary
- 19:2319:23, 19 June 2013 diff hist +16 MediaWiki:Sidebar No edit summary
- 19:2219:22, 19 June 2013 diff hist +281 N MediaWiki:Sidebar Created page with "* ANGSD * Relate * BAMSE * CATS * ngsAdmix * admixRelate * LDadmix * navigation ** mainpage|mainpage-description ** portal-url|portal ** currentevents-url|currentevents ** re..."
