User contributions for Sonia4
Jump to navigation
Jump to search
7 August 2019
- 00:5100:51, 7 August 2019 diff hist −5 PCAngsdTutorial →Run PCAngsd
- 00:5000:50, 7 August 2019 diff hist +2 PCAngsdTutorial →View the genotype likelihood beagle file
- 00:5000:50, 7 August 2019 diff hist +52 PCAngsdTutorial →Download the beagle genotype likelihood input file
- 00:4800:48, 7 August 2019 diff hist −2 PCAngsdTutorial No edit summary
30 July 2019
- 14:2514:25, 30 July 2019 diff hist −1,053 PCAngsdTutorial →Download the beagle genotype likelihood input file
- 14:2314:23, 30 July 2019 diff hist +3,576 PCAngsdTutorial →Demo 2: Selection
- 14:0414:04, 30 July 2019 diff hist −1 PCAngsdTutorial →Demo 2: Selection
- 14:0414:04, 30 July 2019 diff hist +3 PCAngsdTutorial →Demo 2: Selection
- 14:0414:04, 30 July 2019 diff hist −21 PCAngsdTutorial →Demo 2: Selection
- 01:4101:41, 30 July 2019 diff hist −56 PCAngsdTutorial No edit summary
- 01:3301:33, 30 July 2019 diff hist +20 PCAngsdTutorial →Admixture based on 1st two PC
- 01:3201:32, 30 July 2019 diff hist +3 PCAngsdTutorial →Admixture based on 1st two PC
- 01:2701:27, 30 July 2019 diff hist +57 PCAngsdTutorial No edit summary
- 01:2301:23, 30 July 2019 diff hist +2 PCAngsdTutorial →Selection
- 01:2301:23, 30 July 2019 diff hist +2 PCAngsdTutorial →Inbreeding with individual allele frequencies
- 01:2301:23, 30 July 2019 diff hist +2 PCAngsdTutorial →Inbreeding in the admixed individuals
- 01:2201:22, 30 July 2019 diff hist +1,612 PCAngsdTutorial →Run PCAngsd
- 01:1401:14, 30 July 2019 diff hist +781 PCAngsdTutorial →Run PCAngsd
- 01:1001:10, 30 July 2019 diff hist −2 PCAngsdTutorial →Run PCAngsd
- 01:1001:10, 30 July 2019 diff hist +2 PCAngsdTutorial →Run PCAngsd
- 01:0901:09, 30 July 2019 diff hist +87 PCAngsdTutorial →Run PCAngsd
- 01:0601:06, 30 July 2019 diff hist +635 PCAngsdTutorial →Run PCAngsd
- 00:1700:17, 30 July 2019 diff hist +1 PCAngsdTutorial →Run PCAngsd
- 00:1600:16, 30 July 2019 diff hist +1 PCAngsdTutorial →Run PCAngsd
- 00:1600:16, 30 July 2019 diff hist +333 PCAngsdTutorial →Run PCAngsd
- 00:1100:11, 30 July 2019 diff hist −36 PCAngsdTutorial →Run PCAngsd
- 00:1100:11, 30 July 2019 diff hist +132 PCAngsdTutorial →Load the Python module
- 00:0700:07, 30 July 2019 diff hist 0 PCAngsdTutorial →Set the path to PCAngsd
- 00:0700:07, 30 July 2019 diff hist 0 PCAngsdTutorial →Set the path to PCAngsd
- 00:0600:06, 30 July 2019 diff hist +79 PCAngsdTutorial →View population information file
- 00:0400:04, 30 July 2019 diff hist +2 PCAngsdTutorial →PCA with admixture aware priors
- 00:0300:03, 30 July 2019 diff hist −1 NgsAdmixTutorial →Run NGSadmix
- 00:0300:03, 30 July 2019 diff hist +6 NgsAdmixTutorial →Download
- 00:0300:03, 30 July 2019 diff hist −1 NgsAdmixTutorial →Plot the results in R
- 00:0300:03, 30 July 2019 diff hist −2 NgsAdmixTutorial →Plot the results in R
- 00:0200:02, 30 July 2019 diff hist +18 NgsAdmixTutorial →The output
- 00:0100:01, 30 July 2019 diff hist +2 NgsAdmixTutorial →View the genotype likelihood beagle file
29 July 2019
- 23:2323:23, 29 July 2019 diff hist −1 PCAngsdTutorial →View the genotype likelihood beagle file
- 23:2223:22, 29 July 2019 diff hist +1,429 PCAngsdTutorial →Download the beagle genotype likelihood input file
- 23:2123:21, 29 July 2019 diff hist +4 NgsAdmixTutorial →View the genotype likelihood beagle file
- 23:2023:20, 29 July 2019 diff hist −2 NgsAdmixTutorial →View the genotype likelihood beagle file
- 23:1523:15, 29 July 2019 diff hist +67 NgsAdmixTutorial →Download the beagle genotype likelihood input file
- 23:1423:14, 29 July 2019 diff hist −1 NgsAdmixTutorial →Download the beagle genotype likelihood input file
- 23:1223:12, 29 July 2019 diff hist −17 PCAngsdTutorial →PCA with admixture aware priors
- 23:1123:11, 29 July 2019 diff hist −1 PCAngsdTutorial →Create directories
- 22:5422:54, 29 July 2019 diff hist +615 PCAngsdTutorial →Set the path to PCAngsd
- 22:4022:40, 29 July 2019 diff hist +225 PCAngsdTutorial →Set paths
- 13:2313:23, 29 July 2019 diff hist +368 PCAngsdTutorial No edit summary
- 13:1813:18, 29 July 2019 diff hist +86 PCAngsdTutorial No edit summary
- 12:5112:51, 29 July 2019 diff hist −5 PCAngsdv2 No edit summary
- 12:5012:50, 29 July 2019 diff hist +129 PCAngsdv2 →Quick start
- 12:1012:10, 29 July 2019 diff hist +4 PCAngsdv2 →Quick start
- 12:0912:09, 29 July 2019 diff hist −2 PCAngsdv2 →Quick start
- 12:0512:05, 29 July 2019 diff hist +168 PCAngsdv2 →Quick start
- 11:5611:56, 29 July 2019 diff hist −50 PCAngsdv2 →Quick start
- 11:5311:53, 29 July 2019 diff hist +66 PCAngsdv2 →Using PCAngsd
- 11:4811:48, 29 July 2019 diff hist −1 PCAngsdv2 →Input
- 11:4811:48, 29 July 2019 diff hist −1 PCAngsdv2 →Quick start
- 11:4711:47, 29 July 2019 diff hist −7 PCAngsdv2 →Using PCAngsd
- 11:4711:47, 29 July 2019 diff hist −19 PCAngsdv2 →Output
- 11:4611:46, 29 July 2019 diff hist +606 PCAngsdv2 →Input
- 11:3811:38, 29 July 2019 diff hist +2 PCAngsdv2 →Download and Installation
- 11:3711:37, 29 July 2019 diff hist −2 PCAngsdv2 →Download and Installation
- 11:3711:37, 29 July 2019 diff hist +15 PCAngsdv2 →Download and Installation
- 11:3611:36, 29 July 2019 diff hist +258 PCAngsdv2 →Download and Installation
- 10:3810:38, 29 July 2019 diff hist 0 PCAngsdv2 →Overview
- 10:3510:35, 29 July 2019 diff hist +10 PCAngsdv2 No edit summary
- 10:3410:34, 29 July 2019 diff hist −827 PCAngsdv2 →Selection
- 10:3310:33, 29 July 2019 diff hist +488 PCAngsdv2 →Selection
- 10:3210:32, 29 July 2019 diff hist −7 PCAngsdv2 →Inbreeding
- 10:3110:31, 29 July 2019 diff hist +139 PCAngsdv2 →Admixture
- 10:2910:29, 29 July 2019 diff hist −43 PCAngsdv2 →Estimation of individual allele frequencies
- 10:2710:27, 29 July 2019 diff hist +259 PCAngsdv2 No edit summary
- 10:2410:24, 29 July 2019 diff hist −2 PCAngsdv2 No edit summary
- 10:2410:24, 29 July 2019 diff hist +11 PCAngsdv2 No edit summary
- 10:2310:23, 29 July 2019 diff hist +79 PCAngsdv2 No edit summary
23 July 2019
- 15:5415:54, 23 July 2019 diff hist +188 PCAngsdv2 →Input
- 15:5015:50, 23 July 2019 diff hist +205 PCAngsdv2 →Citation
- 15:4615:46, 23 July 2019 diff hist +2 PCAngsdv2 →Input
- 15:4315:43, 23 July 2019 diff hist +1 PCAngsdv2 →Download and Installation
- 15:4315:43, 23 July 2019 diff hist +1 PCAngsdv2 →Download and Installation
- 15:4215:42, 23 July 2019 diff hist −4 PCAngsdv2 →Overview
- 15:4115:41, 23 July 2019 diff hist −2 PCAngsdv2 No edit summary
- 15:4115:41, 23 July 2019 diff hist +2 PCAngsdv2 No edit summary
- 15:4015:40, 23 July 2019 diff hist +1 PCAngsdv2 No edit summary
- 15:3415:34, 23 July 2019 diff hist +456 PCAngsdv2 No edit summary
- 15:0915:09, 23 July 2019 diff hist −2 NgsAdmix →Parameters current
- 15:0815:08, 23 July 2019 diff hist +2 NgsAdmix →Parameters
- 14:5614:56, 23 July 2019 diff hist +104 PCAngsdv2 No edit summary
- 14:5414:54, 23 July 2019 diff hist −1 PCAngsdv2 →Overview
- 14:5314:53, 23 July 2019 diff hist +9,421 N PCAngsdv2 Created page with " PCAngsd is a framework that estimates the covariance matrix for low depth next-generation sequencing (NGS) data in heterogeneous populations using principal component analys..."
- 14:4014:40, 23 July 2019 diff hist +20 N PCAngsdTutorial Created page with "tutorial in progress"
12 July 2019
- 11:4811:48, 12 July 2019 diff hist 0 NgsAdmixTutorial →view population information file
- 11:4811:48, 12 July 2019 diff hist 0 NgsAdmixTutorial →The test data
- 11:4711:47, 12 July 2019 diff hist 0 NgsAdmixTutorial →view the genotype likelihood beagle file
- 11:4511:45, 12 July 2019 diff hist −2 NgsAdmixTutorial →Plot the results in R
- 11:4411:44, 12 July 2019 diff hist 0 NgsAdmixTutorial →choose a differnt k
- 11:4411:44, 12 July 2019 diff hist 0 NgsAdmixTutorial →plot the results in R
- 10:4410:44, 12 July 2019 diff hist +10 NgsAdmixv2 →Parameters current
- 10:4210:42, 12 July 2019 diff hist −134 NgsAdmixv2 No edit summary