ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
Orphaned pages
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- Abbababa
- Abbababa2
- Angsd structure
- Authors
- Base quality
- Bugs
- Changes
- Citing angsd
- Contamination
- Covariance matrix for PCA
- Depth
- Direct Ancestry
- DistAngsd
- Error estimation method
- Example of a covariance file
- Example of a covariate file
- Example of a quantitative phenotype file
- Example of cases control phenotype file
- Fst correctness
- Genotype likelihoods from alignments new
- Glf files
- HWE test
- Haploid calling
- Inbreed
- Introduction
- LD
- Majorminor
- Memory Usage
- Misc example
- Mismatch
- MsToGlf
- NGSadmix
- NgsRelate
- Pbs
- Plink
- Regionfile
- SNP Calling
- Skotte
- Supersim
- Temp
- Thorfinn
- Tutorial
- Vcf