ANGSD: Analysis of next generation Sequencing Data

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  1. Abbababa
  2. Abbababa2
  3. Angsd structure
  4. Authors
  5. Base quality
  6. Bugs
  7. Changes
  8. Citing angsd
  9. Contamination
  10. Covariance matrix for PCA
  11. Depth
  12. Direct Ancestry
  13. DistAngsd
  14. Error estimation method
  15. Example of a covariance file
  16. Example of a covariate file
  17. Example of a quantitative phenotype file
  18. Example of cases control phenotype file
  19. Fst correctness
  20. Genotype likelihoods from alignments new
  21. Glf files
  22. HWE test
  23. Haploid calling
  24. Inbreed
  25. Introduction
  26. LD
  27. Majorminor
  28. Memory Usage
  29. Misc example
  30. Mismatch
  31. MsToGlf
  32. NGSadmix
  33. NgsRelate
  34. Pbs
  35. Plink
  36. Regionfile
  37. SNP Calling
  38. Skotte
  39. Supersim
  40. Temp
  41. Thorfinn
  42. Tutorial
  43. Vcf

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