ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Albrecht
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22 March 2013
- 19:1019:10, 22 March 2013 diff hist +130 MediaWiki:Sidebar No edit summary
- 16:2716:27, 22 March 2013 diff hist −33 ANGSD No edit summary
27 February 2013
- 12:1112:11, 27 February 2013 diff hist −72 Base quality →options
- 12:1012:10, 27 February 2013 diff hist −67 Error estimation →additional options
- 12:1012:10, 27 February 2013 diff hist −72 Allele Counts →options
- 12:1012:10, 27 February 2013 diff hist −72 Genotype Likelihoods →options
- 12:0812:08, 27 February 2013 diff hist −71 Genotype Likelihoods →options
- 12:0812:08, 27 February 2013 diff hist −72 Genotype Likelihoods →options
13 February 2013
- 11:5011:50, 13 February 2013 diff hist +278 Error estimation →example
12 February 2013
- 18:1218:12, 12 February 2013 diff hist −17 Error estimation →Error estimation using an outgroup and an error free individual
- 18:1218:12, 12 February 2013 diff hist +116 Error estimation →Error estimation using an outgroup and an error free individual
- 18:0618:06, 12 February 2013 diff hist +719 Error estimation →Error estimation using an outgroup and an error free individual
- 17:5317:53, 12 February 2013 diff hist −14 Error estimation method No edit summary current
- 17:5217:52, 12 February 2013 diff hist +1,483 N Error estimation method Created page with " The estimated rates can roughly be intrepreted as relative error rates. That is excess of errors in your sample compare to the error in the perfect indviduals. The idea is th..."
29 January 2013
- 19:1719:17, 29 January 2013 diff hist +1 Depth →Output
17 January 2013
- 20:2320:23, 17 January 2013 diff hist +16 Input →arguments
14 January 2013
4 December 2012
- 19:1019:10, 4 December 2012 diff hist −1,035 Bugs No edit summary
- 18:5818:58, 4 December 2012 diff hist +17 Bugs No edit summary
23 October 2012
- 21:1721:17, 23 October 2012 diff hist 0 MediaWiki:Sidebar No edit summary
- 21:1021:10, 23 October 2012 diff hist −2 MediaWiki:Sidebar No edit summary
- 20:4420:44, 23 October 2012 diff hist −2,321 Change log →Version notes
- 20:3620:36, 23 October 2012 diff hist 0 Citing angsd →Maf estimation from counts of alleles
- 20:3620:36, 23 October 2012 diff hist +2 Citing angsd →Maf estimation from counts of alleles
- 19:0919:09, 23 October 2012 diff hist +29 MediaWiki:Sidebar No edit summary
- 19:0819:08, 23 October 2012 diff hist +33 MediaWiki:Sidebar No edit summary
16 October 2012
- 15:5515:55, 16 October 2012 diff hist 0 MediaWiki:Sidebar No edit summary
- 15:5015:50, 16 October 2012 diff hist +4 Citing angsd →Maf estimation from counts of alleles
- 15:5015:50, 16 October 2012 diff hist −2 Citing angsd →Maf estimation from counts of alleles
- 15:4815:48, 16 October 2012 diff hist +7 MediaWiki:Sidebar No edit summary
- 15:4415:44, 16 October 2012 diff hist −13 Error estimation →example
- 15:4115:41, 16 October 2012 diff hist −380 Installation →Misc folder
10 October 2012
- 21:0021:00, 10 October 2012 diff hist −29 Major Minor →From genotype likelihood data
- 21:0021:00, 10 October 2012 diff hist −1 Major Minor →From alignment data
- 20:5920:59, 10 October 2012 diff hist +17 Major Minor →From genotype probability data
- 20:1020:10, 10 October 2012 diff hist +9 MediaWiki:Sidebar No edit summary
- 20:1020:10, 10 October 2012 diff hist +1 Genotype calling →example
- 20:0920:09, 10 October 2012 diff hist +1,248 Genotype calling →Genotype calling
- 18:3818:38, 10 October 2012 diff hist −143 Genotype calling →Genotype calling
- 16:4916:49, 10 October 2012 diff hist +63 Association →example
- 15:1815:18, 10 October 2012 diff hist +20 Association →example
- 15:1615:16, 10 October 2012 diff hist +40 Association →example
- 15:0215:02, 10 October 2012 diff hist +346 Association →Score statistic
- 15:0015:00, 10 October 2012 diff hist +143 Association →Case control association using allele frequencies
- 14:5014:50, 10 October 2012 diff hist −6 Association No edit summary
- 14:5014:50, 10 October 2012 diff hist +95 Association →Case control association using allele frequencies
- 14:2414:24, 10 October 2012 diff hist +18 MediaWiki:Sidebar No edit summary
- 14:2414:24, 10 October 2012 diff hist +9 MediaWiki:Sidebar No edit summary
- 11:2411:24, 10 October 2012 diff hist +228 Input →genotype probability files
28 September 2012
- 16:2616:26, 28 September 2012 diff hist +1 Input →optional arguments
24 September 2012
- 17:3117:31, 24 September 2012 diff hist −16 Installation →Download
- 15:2915:29, 24 September 2012 diff hist −53 Filters →Selected Sites
- 13:5513:55, 24 September 2012 diff hist +123 Citing angsd →Methods
- 13:3513:35, 24 September 2012 diff hist +260 N Gatk Created page with "McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo MA (2010). The Genome Analysis Toolkit: a MapReduce ..."
- 13:3413:34, 24 September 2012 diff hist +80 Citing angsd No edit summary
- 13:3213:32, 24 September 2012 diff hist +175 N SoapSNP Created page with "Li R, Li Y, Fang X, Yang H, Wang J, Kristiansen K, Wang J. SNP detection for massively parallel whole-genome resequencing. Genome Res. 2009 Jun;19(6):1124-32. Epub 2009 May 6." current
- 13:2813:28, 24 September 2012 diff hist −7 Citing angsd No edit summary
- 13:2813:28, 24 September 2012 diff hist −179 Skotte Blanked the page current
- 13:2713:27, 24 September 2012 diff hist +179 N Skotte2012 Created page with "Line Skotte, Thorfinn Sand Korneliussen, Anders Albrechtsen. Association testing for next-generation sequencing data using score statistics. Genet Epidemiol. 2012 Jul;36(5):43..."
- 13:2513:25, 24 September 2012 diff hist −221 SuYeon Redirected page to Kim2011 current
- 13:2513:25, 24 September 2012 diff hist +242 N Kim2011 Created page with "Kim SY, Lohmueller KE, Albrechtsen A, Li Y, Korneliussen T, Tian G, Grarup N, Jiang T, Andersen G, Witte D, et al., 2011. Estimation of allele frequency and association mappin..."
- 13:0713:07, 24 September 2012 diff hist +26 Filters No edit summary
- 13:0613:06, 24 September 2012 diff hist +24 Filters No edit summary
- 13:0513:05, 24 September 2012 diff hist +72 Filters No edit summary
21 September 2012
- 15:4715:47, 21 September 2012 diff hist +376 N Citing angsd Created page with "Currently there is not publication for angsd. However, many of the method implimented here are published. **Methods** allele estimation from genotype likelihoods ;- doMaf ..."
- 15:4315:43, 21 September 2012 diff hist +29 MediaWiki:Sidebar No edit summary
- 15:2715:27, 21 September 2012 diff hist +1,787 SNP calling No edit summary
- 15:1015:10, 21 September 2012 diff hist −36 MediaWiki:Sidebar No edit summary
20 September 2012
- 15:5015:50, 20 September 2012 diff hist +392 Error estimation No edit summary
19 September 2012
- 18:1518:15, 19 September 2012 diff hist +281 Genotype Likelihoods →output genotype likelihoods
- 18:0318:03, 19 September 2012 diff hist +2,006 Genotype Likelihoods →output genotype likelihoods
- 18:0018:00, 19 September 2012 diff hist +1 Genotype Likelihoods No edit summary
- 17:4817:48, 19 September 2012 diff hist +915 Genotype Likelihoods No edit summary
- 17:3517:35, 19 September 2012 diff hist +36 Genotype Likelihoods →Genotype likelihoods from alignments
- 17:2317:23, 19 September 2012 diff hist +296 Base quality No edit summary
- 17:2217:22, 19 September 2012 diff hist +15 Base quality →Example
- 17:2117:21, 19 September 2012 diff hist −21 Base quality No edit summary
- 17:2017:20, 19 September 2012 diff hist +353 Base quality No edit summary
- 17:1117:11, 19 September 2012 diff hist +196 N Base quality Created page with "=Base quality counts= Counts the number of bases for each quality. ==Example== Print the individuals depth from bam files <pre> ./angsd -out out -doCounts 1 -doQsDist 1 -ba..."
- 17:0317:03, 19 September 2012 diff hist +42 Allele Counts →options
- 16:5816:58, 19 September 2012 diff hist +44 MediaWiki:Sidebar No edit summary
- 16:5616:56, 19 September 2012 diff hist +106 Allele Counts →options
- 16:5316:53, 19 September 2012 diff hist +251 Allele Counts No edit summary
17 September 2012
- 16:1516:15, 17 September 2012 diff hist +6 Genotype Likelihoods →soapSNP
- 16:0416:04, 17 September 2012 diff hist −34 Genotype Likelihoods →Genotype likelihoods from alignments
16 July 2012
- 18:3918:39, 16 July 2012 diff hist +184 Genotype Likelihoods →Samtools
- 18:1618:16, 16 July 2012 diff hist −70 Genotype Likelihoods →soapSNP
22 June 2012
- 16:0016:00, 22 June 2012 diff hist +64 Genotype Likelihoods →Genotype likelihoods from alignments
21 June 2012
- 16:5416:54, 21 June 2012 diff hist +97 Genotype Likelihoods →Genotype likelihoods from alignments
- 11:4511:45, 21 June 2012 diff hist +30 Association →Score statistic
- 11:4211:42, 21 June 2012 diff hist −97 Association →Association study
- 11:3411:34, 21 June 2012 diff hist +1,043 Association →Association
- 10:2310:23, 21 June 2012 diff hist +242 Beagle input →output
- 10:2110:21, 21 June 2012 diff hist +1,687 N Beagle input Created page with "Beagle haplotype imputation and be performed directly on genotype likelhoods. To generate beagle input file use ; -doGlf 2 In order to make this file the major and minor all..."
- 10:1210:12, 21 June 2012 diff hist +32 Association →Association
- 10:1110:11, 21 June 2012 diff hist +271 N Example of a covariate file Created page with "1 0 0 1 <br> 1 0.1 0 0 <br> 2 0 1 0 <br> 2 0 1 0 <br> 2 0.1 0 1 <br> 1 0 0 1 <br> 1 0.3 0 0 <br> 2 0 0 0 <br> 1 0 0 0 <br> 2 0.2 0 1 <br> 1 0 1 0 <br> 1 0 0 0 <br> 1 0.1 0 0 <..." current
- 10:1110:11, 21 June 2012 diff hist −1 Association →Score statistic
- 10:1010:10, 21 June 2012 diff hist +271 N Example of a covariance file Created page with "1 0 0 1 <br> 1 0.1 0 0 <br> 2 0 1 0 <br> 2 0 1 0 <br> 2 0.1 0 1 <br> 1 0 0 1 <br> 1 0.3 0 0 <br> 2 0 0 0 <br> 1 0 0 0 <br> 2 0.2 0 1 <br> 1 0 1 0 <br> 1 0 0 0 <br> 1 0.1 0 0 <..." current
- 10:1010:10, 21 June 2012 diff hist +364 N Example of a quantitative phenotype file Created page with "-999<br> 2.06164722761138<br> -0.091935218675602<br> -0.287527686061831<br> -999<br> -999<br> -1.20996664036026<br> 0.0188541092307412<br> -2.1122713873334<br> -999<br> -1.329..." current
- 10:0910:09, 21 June 2012 diff hist +98 N Example of cases control phenotype file Created page with "1<br> 0<br> 0<br> 0<br> 1<br> 1<br> 1<br> 1<br> 0<br> -999<br> 1<br> 0<br> 0<br> 0<br> 0<br> 1<br>" current
19 June 2012
- 15:2115:21, 19 June 2012 diff hist +66 Input →optional arguments
- 13:4313:43, 19 June 2012 diff hist +1 ANGSD →Overview of input and intermediary data
- 13:3813:38, 19 June 2012 diff hist +30 ANGSD →Synopsis
- 11:0311:03, 19 June 2012 diff hist +10 MediaWiki:Sidebar No edit summary
- 10:5410:54, 19 June 2012 diff hist +200 Genotype Likelihoods →Genotype likelihoods from alignments
18 June 2012
- 20:4720:47, 18 June 2012 diff hist 0 Genotype Likelihoods →Genotype likelihoods from alignments
- 20:0520:05, 18 June 2012 diff hist +178 Genotype Likelihoods No edit summary
- 19:5519:55, 18 June 2012 diff hist −3 MediaWiki:Sidebar No edit summary
- 19:5319:53, 18 June 2012 diff hist +1,262 Allele Counts →dumping counts
- 19:3919:39, 18 June 2012 diff hist −1 Allele Frequencies →Allele Frequency estimation
- 19:3519:35, 18 June 2012 diff hist +240 ANGSD →Analysis from genotype probabilities
- 19:0619:06, 18 June 2012 diff hist +14 Input →glfv3
- 19:0419:04, 18 June 2012 diff hist +54 ANGSD →About
- 19:0319:03, 18 June 2012 diff hist −463 ANGSD →Commands
- 18:2318:23, 18 June 2012 diff hist −10 Allele Frequencies No edit summary
- 18:2118:21, 18 June 2012 diff hist −12 Input No edit summary
- 18:1118:11, 18 June 2012 diff hist −79 ANGSD →Wish list
- 18:0818:08, 18 June 2012 diff hist +86 Change log →Version notes
- 18:0818:08, 18 June 2012 diff hist −649 ANGSD →Possible Bugs
- 18:0718:07, 18 June 2012 diff hist −1,934 ANGSD →Version notes
- 18:0718:07, 18 June 2012 diff hist +1,932 N Change log Created page with "=Version notes= * 0.16 Is now bundled with SAMtools-0.1.17 and the mpileup (and friends) command be used for passing data to dirty. * 0.17 added extra options -minInd and -min..."
- 18:0618:06, 18 June 2012 diff hist +26 MediaWiki:Sidebar No edit summary
- 18:0618:06, 18 June 2012 diff hist +85 ANGSD →Possible Bugs
- 18:0518:05, 18 June 2012 diff hist −185 ANGSD →Example for getting the depths with bamfiles
- 18:0418:04, 18 June 2012 diff hist −322 ANGSD →sfstools
- 18:0418:04, 18 June 2012 diff hist −1,530 ANGSD →Run Examples
- 18:0418:04, 18 June 2012 diff hist +1,528 N Misc example Created page with "=Run Examples= ==Using glfv3== <code lang="sh"> ../dirty -samglf ceu.glf.list -outfiles test.glf -doMaf 2 -fai numSort.Fai -nLines 50000 -chunkSize 500 -nThreads 16 </code..."
- 18:0418:04, 18 June 2012 diff hist +36 MediaWiki:Sidebar No edit summary
- 18:0318:03, 18 June 2012 diff hist −708 ANGSD →All options
- 17:3417:34, 18 June 2012 diff hist −97 ANGSD →Association study
- 17:2917:29, 18 June 2012 diff hist +97 Association No edit summary
- 17:2417:24, 18 June 2012 diff hist −726 ANGSD →Input sequencing data
- 17:2417:24, 18 June 2012 diff hist +447 Input →genotype likelihood files
- 17:2217:22, 18 June 2012 diff hist −821 ANGSD →Output data
- 17:2217:22, 18 June 2012 diff hist −973 ANGSD →Association
- 16:3916:39, 18 June 2012 diff hist +983 Association No edit summary
- 16:2916:29, 18 June 2012 diff hist +822 Allele Frequencies →Allele Frequency estimation
- 16:2716:27, 18 June 2012 diff hist −10 ANGSD →Methods
- 16:2716:27, 18 June 2012 diff hist −74 ANGSD →HWE and Inbreeding estimates
- 16:2716:27, 18 June 2012 diff hist +3,624 N Inbreed Created page with "Definition <math> \begin{align} p(AA)&=P_A^2+p_Ap_aF \\ p(Aa)&=2P_Ap_a-2p_Ap_aF \end{align} </math> ;n: total number of individuals ;X: all sequencing data ;f: allele frequ..." current
- 16:2616:26, 18 June 2012 diff hist +72 N HWE and Inbreeding estimates Created page with "==HWE and Inbreeding estimates== For method details see here"
- 16:2616:26, 18 June 2012 diff hist −21 ANGSD →Heterozygosity
- 16:2616:26, 18 June 2012 diff hist −1,603 ANGSD →Full example for simulating nextgen data and estimating SFS (somewhat deprecated should use sfstools now)
- 16:2516:25, 18 June 2012 diff hist +1,603 SFS Estimation No edit summary
- 16:2516:25, 18 June 2012 diff hist −686 ANGSD →Download and Installation
- 16:2416:24, 18 June 2012 diff hist +380 Installation No edit summary
- 16:2116:21, 18 June 2012 diff hist −2,753 ANGSD →Association
- 16:2116:21, 18 June 2012 diff hist +2,751 N Association Created page with "==Association== Association can be performed using two approaches. One based on testing differences in allele frequencies between cases and control while the other is based o..."
- 16:2116:21, 18 June 2012 diff hist −97 MediaWiki:Sidebar No edit summary
- 16:2016:20, 18 June 2012 diff hist +97 MediaWiki:Sidebar No edit summary
- 16:1916:19, 18 June 2012 diff hist +29 N Covariance matrix for PCA Created page with "==Covariance matrix for PCA==" current
- 16:1916:19, 18 June 2012 diff hist −31 ANGSD →Covariance matrix for PCA
- 16:1816:18, 18 June 2012 diff hist +745 N SNP calling Created page with "==SNP Calling== ===Likelihood ratio test=== supply -doSNP 1 Then the MAF estimate(s) given by -doMaf INT, will be used for a like ratio test <pre> chromo position ma..."
- 16:1816:18, 18 June 2012 diff hist −747 ANGSD →SNP Calling
- 16:1816:18, 18 June 2012 diff hist +27 MediaWiki:Sidebar No edit summary
- 16:1816:18, 18 June 2012 diff hist +125 N Genotype Likelihoods Created page with "==Genotype likelihoods from alignments== ===Kim et al.=== Citation Citation ===Samtools=== ===GATK==="
- 16:1716:17, 18 June 2012 diff hist −127 ANGSD →Genotype likelihoods from alignments
- 16:1716:17, 18 June 2012 diff hist −780 ANGSD →Genotype calling
- 16:1716:17, 18 June 2012 diff hist +778 N Genotype calling Created page with "==Genotype calling== output file .geno -doGeno 1, print out major minor -doGeno 2, print the called genotype under HWE (suyeon maf prior method) -doGeno 4, print out the g..."
- 16:1716:17, 18 June 2012 diff hist +17 MediaWiki:Sidebar No edit summary
- 16:1616:16, 18 June 2012 diff hist +20 MediaWiki:Sidebar No edit summary
- 16:1516:15, 18 June 2012 diff hist +2 MediaWiki:Sidebar No edit summary
- 16:1516:15, 18 June 2012 diff hist −238 ANGSD →dumping counts
- 16:1516:15, 18 June 2012 diff hist +236 N Allele Counts Created page with "==dumping counts== -dumpCounts 1, print overall depth in the .pos file -dumpCounts 2, 1) plus .counts with overall sample depth, each line nInd long -dumpCounts 3,..."
- 16:1416:14, 18 June 2012 diff hist +44 MediaWiki:Sidebar No edit summary
- 16:1416:14, 18 June 2012 diff hist −86 ANGSD →Error estimation
- 16:1416:14, 18 June 2012 diff hist +84 N Error estimation Created page with "==Error estimation== ===Kim et al.=== Citation ===Using an outgroup==="
- 16:1316:13, 18 June 2012 diff hist −336 ANGSD →realSFS
- 16:1316:13, 18 June 2012 diff hist +334 N SFS Estimation Created page with "==realSFS== From version 0.20 we can now estimate the joint likelihood of being in frequency j. From version 0.24 the tajima is being estimated -realSFS 1 an sfs file will ..."
- 15:5515:55, 18 June 2012 diff hist +2 Allele Frequencies →Example
- 15:5515:55, 18 June 2012 diff hist +174 Allele Frequencies →Estimator from genotype probabilities
- 15:5315:53, 18 June 2012 diff hist +397 Allele Frequencies →Allele frequencies from genotype likelihoods
- 14:4414:44, 18 June 2012 diff hist +91 Allele Frequencies →Estimator from sequencing data
- 13:2713:27, 18 June 2012 diff hist +1 Allele Frequencies →ML estimator with known minor
- 13:2713:27, 18 June 2012 diff hist +2 Allele Frequencies →Allele Frequency estimation
- 13:2613:26, 18 June 2012 diff hist +305 Allele Frequencies No edit summary
- 12:1512:15, 18 June 2012 diff hist +1,576 Allele Frequencies No edit summary
15 June 2012
- 11:1411:14, 15 June 2012 diff hist +242 N SuYeon Created page with "Kim SY, Lohmueller KE, Albrechtsen A, Li Y, Korneliussen T, Tian G, Grarup N, Jiang T, Andersen G, Witte D, et al., 2011. Estimation of allele frequency and association mappin..."
- 11:1411:14, 15 June 2012 diff hist +4 Allele Frequencies No edit summary
- 11:1311:13, 15 June 2012 diff hist +229 Allele Frequencies No edit summary
14 June 2012
- 22:0222:02, 14 June 2012 diff hist +240 N Allele Frequencies Created page with "==Allele Frequency estimation== -doMaf INT INT=1 bfgs known minor INT=2 EM known minor INT=4 BFGS unknown minor INT=8 EM unknown minor ===Phat estimator=== ===ML est..."
- 21:5921:59, 14 June 2012 diff hist −242 ANGSD →Allele Frequency estimation
- 21:5921:59, 14 June 2012 diff hist −460 ANGSD →Inferring Major and Minor alleles
- 21:4121:41, 14 June 2012 diff hist +1,183 N Majorminor Created page with "Assuming that the considered site is diallelic, we infer those two alleles using the genotype likelihoods. Let <math>\{M,m\}</math> denote the two possible alleles at the dial..." current
- 21:4121:41, 14 June 2012 diff hist +179 N Skotte Created page with "Line Skotte, Thorfinn Sand Korneliussen, Anders Albrechtsen. Association testing for next-generation sequencing data using score statistics. Genet Epidemiol. 2012 Jul;36(5):43..."
- 21:4021:40, 14 June 2012 diff hist +256 N Li2010 Created page with "Li Y, Vinckenbosch N, Tian G, Huerta-Sanchez E, Jiang T, Jiang H, Albrechtsen A, Andersen G, Cao H, Korneliussen T, et al., 2010. Resequencing of 200 human exomes identifies a..." current
- 21:3921:39, 14 June 2012 diff hist +1,015 Major Minor No edit summary
- 20:2320:23, 14 June 2012 diff hist −3 Input →optional arguments
- 20:2320:23, 14 June 2012 diff hist +179 Input →optional arguments
- 20:2120:21, 14 June 2012 diff hist +181 Input →obtional arguments
- 19:4519:45, 14 June 2012 diff hist +569 Input →bam files
- 19:2119:21, 14 June 2012 diff hist −3 Input →options
- 19:2119:21, 14 June 2012 diff hist −6 Input →Mapped sequence file
- 19:2119:21, 14 June 2012 diff hist +830 Input No edit summary
- 19:1619:16, 14 June 2012 diff hist −17 Input →Mapped sequence file
- 19:0219:02, 14 June 2012 diff hist −4 Input →example
- 18:5718:57, 14 June 2012 diff hist +285 N Installation Created page with "=Download= The source code is avaible as a tarball and be download here [http://popgen.dk/software/download/angsd/angsd0.3.tar.gz] =Install= Unpack the tarball ===Unix=== Th..."
11 June 2012
- 17:0917:09, 11 June 2012 diff hist +1 Input →example
- 16:5216:52, 11 June 2012 diff hist +988 Input →beagle format
- 12:2912:29, 11 June 2012 diff hist +26 MediaWiki:Sidebar No edit summary
- 12:2812:28, 11 June 2012 diff hist −120 MediaWiki:Sidebar No edit summary
- 12:2312:23, 11 June 2012 diff hist −10 MediaWiki:Sidebar No edit summary
- 12:2312:23, 11 June 2012 diff hist +11 MediaWiki:Sidebar No edit summary
- 12:2312:23, 11 June 2012 diff hist −16 MediaWiki:Sidebar No edit summary
- 12:2212:22, 11 June 2012 diff hist +257 N Input Created page with "ANSGD currently supports various mapped data, genotype likelihood formats and imputed genotype probability files =Mapped sequence file= ==bam files== ==soap files== =geno..."
- 12:1912:19, 11 June 2012 diff hist −14 ANGSD →Input data
- 12:1612:16, 11 June 2012 diff hist −633 ANGSD No edit summary
- 12:1412:14, 11 June 2012 diff hist +16 ANGSD No edit summary
- 11:5911:59, 11 June 2012 diff hist +161 ANGSD →About
- 11:5511:55, 11 June 2012 diff hist +30 ANGSD →overview
- 11:5311:53, 11 June 2012 diff hist +246 ANGSD →About
- 11:5011:50, 11 June 2012 diff hist +17 ANGSD →About
- 11:4811:48, 11 June 2012 diff hist +28 ANGSD →About
- 11:4711:47, 11 June 2012 diff hist +30 MediaWiki:Sitenotice No edit summary
- 11:4511:45, 11 June 2012 diff hist 0 File:Banner.png Albrecht uploaded a new version of "File:Banner.png" current
- 11:4211:42, 11 June 2012 diff hist −29 MediaWiki:Sitenotice No edit summary
- 11:4111:41, 11 June 2012 diff hist +28 MediaWiki:Sitenotice No edit summary
- 11:4011:40, 11 June 2012 diff hist 0 File:Banner.png Albrecht uploaded a new version of "File:Banner.png"
- 11:3311:33, 11 June 2012 diff hist −27 ANGSD No edit summary
- 11:3311:33, 11 June 2012 diff hist 0 N File:Banner.png No edit summary
- 11:3211:32, 11 June 2012 diff hist 0 MediaWiki:Sitenotice No edit summary
- 11:3211:32, 11 June 2012 diff hist +21 N MediaWiki:Sitenotice Created page with " Image:banner.gif"
- 11:3111:31, 11 June 2012 diff hist +29 ANGSD No edit summary
29 May 2012
- 23:0323:03, 29 May 2012 diff hist −127 ANGSD →overview
- 23:0323:03, 29 May 2012 diff hist +6 ANGSD →About
- 23:0123:01, 29 May 2012 diff hist +330 ANGSD →overview
- 22:2422:24, 29 May 2012 diff hist −49 ANGSD →genotype probabilities
- 22:2422:24, 29 May 2012 diff hist −89 ANGSD →genotype likelihoods
- 22:2322:23, 29 May 2012 diff hist −52 ANGSD →sequencing data
- 21:4721:47, 29 May 2012 diff hist +587 N Temp Created page with "<classdiagram> [sequence data]->[genotype;likelihoods] [bam files{bg:orange}]->[sequence data] [SOAP files{bg:orange}]->[sequence data] [sequence data]->[phat estimates;er..." current
- 21:4121:41, 29 May 2012 diff hist +233 ANGSD →genotype probabilities
- 21:3821:38, 29 May 2012 diff hist −21 ANGSD →About
- 21:3721:37, 29 May 2012 diff hist +344 ANGSD →genotype likelihoods
- 21:2921:29, 29 May 2012 diff hist +223 ANGSD →sequencing data
- 21:1721:17, 29 May 2012 diff hist +180 ANGSD →About
- 21:1721:17, 29 May 2012 diff hist +35 ANGSD No edit summary
- 20:2420:24, 29 May 2012 diff hist 0 ANGSD →about
- 20:2420:24, 29 May 2012 diff hist −422 ANGSD No edit summary
- 20:2220:22, 29 May 2012 diff hist +19 N Main Page Albrecht moved page Main Page to ANGSD current
- 20:2220:22, 29 May 2012 diff hist 0 m ANGSD Albrecht moved page Main Page to ANGSD
- 20:1620:16, 29 May 2012 diff hist +29 ANGSD No edit summary
- 20:1020:10, 29 May 2012 diff hist 0 N File:AngsdLogo.png No edit summary current
- 18:2018:20, 29 May 2012 diff hist +26 ANGSD No edit summary
- 17:5517:55, 29 May 2012 diff hist +4 MediaWiki:Mainpage No edit summary current
- 17:5417:54, 29 May 2012 diff hist +5 N MediaWiki:Mainpage Created page with "ANGSD"
- 17:4817:48, 29 May 2012 diff hist −399 MediaWiki:Sidebar No edit summary
- 17:4517:45, 29 May 2012 diff hist −288 MediaWiki:Sidebar No edit summary
- 17:4317:43, 29 May 2012 diff hist +1,617 N MediaWiki:Sidebar Created page with "* Pages ** http://130.225.210.106/dirtywiki/index.php/Main_Page#Download|dirty ** http://130.225.210.106/dirtywiki/index.php/Main_Page#Installation|Installation ** http://130...."
- 17:4217:42, 29 May 2012 diff hist +16,749 ANGSD No edit summary
- 17:3717:37, 29 May 2012 diff hist −34 ANGSD No edit summary