ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Albrecht
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26 February 2014
- 18:4018:40, 26 February 2014 diff hist +105 Allele Frequencies →.mafs
- 18:3718:37, 26 February 2014 diff hist −606 Allele Frequencies →.mafs
- 18:3618:36, 26 February 2014 diff hist +44 Allele Frequencies →Allele Frequency estimation
- 18:3618:36, 26 February 2014 diff hist +974 N SYKmaf Created page with "==ML estimator with known minor== First infer the Major and Minor allele and then use BFGS (-doMaf 1) optimazation or the EM algorithm (..."
- 18:3518:35, 26 February 2014 diff hist +41 Allele Frequencies →Allele Frequency estimation
- 18:3518:35, 26 February 2014 diff hist −985 Allele Frequencies →Theory
- 18:3418:34, 26 February 2014 diff hist +64 Allele Frequencies No edit summary
- 18:3218:32, 26 February 2014 diff hist +11 User:Thorfinn No edit summary
- 18:3218:32, 26 February 2014 diff hist +867 User:Thorfinn →Anders changes to version 583
- 18:1318:13, 26 February 2014 diff hist +330 User:Thorfinn No edit summary
- 17:4717:47, 26 February 2014 diff hist +57 Allele Frequencies →Example
- 17:4617:46, 26 February 2014 diff hist −19 Allele Frequencies No edit summary
- 17:4517:45, 26 February 2014 diff hist −420 Allele Frequencies No edit summary
- 17:4417:44, 26 February 2014 diff hist +395 N PostFreq Created page with "==Estimator from genotype probabilities== If the genotype probabilities are known the frequencies can be estimated by summing up the posterior probabilities <math> p(G=g|D)</..." current
- 17:4417:44, 26 February 2014 diff hist −93 Allele Frequencies No edit summary
- 17:4117:41, 26 February 2014 diff hist +5 Allele Frequencies →Example
- 17:3917:39, 26 February 2014 diff hist +824 Allele Frequencies No edit summary
- 17:2517:25, 26 February 2014 diff hist +254 Error estimation No edit summary
- 17:2317:23, 26 February 2014 diff hist −75 Error estimation →Theory
- 17:2117:21, 26 February 2014 diff hist +15 Error estimation →Example
- 17:1917:19, 26 February 2014 diff hist +34 Error estimation →Options
- 17:1817:18, 26 February 2014 diff hist +15 Error estimation →Options
- 17:1617:16, 26 February 2014 diff hist +314 Error estimation →Error estimation using an outgroup and an error free individual
- 17:1517:15, 26 February 2014 diff hist +2,063 N ErrorPerfect Created page with "==Method 2== The method was use in Orlando2013 and is described in details in supplementary 4.4 The estimated rates can roughly be intrepreted as relative error rates. T..." current
- 17:1317:13, 26 February 2014 diff hist +28 Error estimation →Error estimation using an outgroup and an error free individual
- 17:1317:13, 26 February 2014 diff hist −2,065 Error estimation →Method 2
- 17:1217:12, 26 February 2014 diff hist −13 ErrorSykMethod No edit summary current
- 17:1217:12, 26 February 2014 diff hist +854 N ErrorSykMethod Created page with "==Method 1== The method is described in kim2011 and work by simultaneously estimating allele frequencies, genotype likelihoods and the error rates. The likelihood of t..."
- 17:1217:12, 26 February 2014 diff hist +69 Error estimation →Error estimation from polymorphic sites
- 17:1117:11, 26 February 2014 diff hist −856 Error estimation →Method 1
- 17:0817:08, 26 February 2014 diff hist +48 Error estimation →Output
- 17:0217:02, 26 February 2014 diff hist 0 Error estimation No edit summary
- 16:1716:17, 26 February 2014 diff hist +1 Error estimation No edit summary
- 16:1616:16, 26 February 2014 diff hist +11 Error estimation →Example
- 16:1216:12, 26 February 2014 diff hist +280 Error estimation No edit summary
- 16:0716:07, 26 February 2014 diff hist +16 Error estimation No edit summary
- 15:3315:33, 26 February 2014 diff hist 0 Major Minor No edit summary
- 15:2915:29, 26 February 2014 diff hist +503 Major Minor No edit summary
- 15:2315:23, 26 February 2014 diff hist +256 Major Minor →Details
- 15:1915:19, 26 February 2014 diff hist −29 Major Minor →From counts of data
- 15:1915:19, 26 February 2014 diff hist −1 Major Minor →From genotype likelihood data
- 15:1515:15, 26 February 2014 diff hist +1,283 N MajorMinor Method Created page with "==From Genotype Likelihoods== Assuming that the considered site is diallelic, we infer those two alleles using the genotype likelihoods. Let <math>\{M,m\}</math> denote the tw..." current
- 15:1515:15, 26 February 2014 diff hist +52 Major Minor →From genotype likelihood data
- 15:1415:14, 26 February 2014 diff hist −1,246 Major Minor No edit summary
- 15:0315:03, 26 February 2014 diff hist −1,610 Genotype Likelihoods →Theory
- 15:0215:02, 26 February 2014 diff hist −10 Genotype Likelihoods →GATK genotype likelihoods
- 15:0115:01, 26 February 2014 diff hist −31 Genotype Likelihoods →Theory
- 14:5914:59, 26 February 2014 diff hist +111 Genotype Likelihoods No edit summary
- 14:5714:57, 26 February 2014 diff hist −13 Genotype Likelihoods →SOAPsnp
- 14:5714:57, 26 February 2014 diff hist −87 Genotype Likelihoods No edit summary
- 14:4514:45, 26 February 2014 diff hist −16 MediaWiki:Sidebar No edit summary
- 14:4314:43, 26 February 2014 diff hist −14 Fasta →Options
- 14:4114:41, 26 February 2014 diff hist −149 Fasta No edit summary
- 14:2114:21, 26 February 2014 diff hist +6 Fasta No edit summary
- 14:1714:17, 26 February 2014 diff hist +19 Allele Counts No edit summary
- 13:5913:59, 26 February 2014 diff hist +123 Association No edit summary
- 13:5113:51, 26 February 2014 diff hist +1,357 Association No edit summary
- 13:1913:19, 26 February 2014 diff hist +34 Abbababa →Options
- 13:1613:16, 26 February 2014 diff hist +73 User:Thorfinn No edit summary
- 13:1513:15, 26 February 2014 diff hist +10 Thetas,Tajima,Neutrality tests No edit summary
- 13:1413:14, 26 February 2014 diff hist +9 Filters →Filters for Bam files
- 13:1313:13, 26 February 2014 diff hist +33 Filters →Examples
- 12:1312:13, 26 February 2014 diff hist −4 Filters →Examples
- 12:1212:12, 26 February 2014 diff hist +6 Filters →Examples
- 12:1212:12, 26 February 2014 diff hist +435 Filters →Examples
- 12:0512:05, 26 February 2014 diff hist +21 Filters →Extra
- 12:0412:04, 26 February 2014 diff hist −1,846 Filters No edit summary
- 11:4411:44, 26 February 2014 diff hist +65 Input No edit summary
- 11:3211:32, 26 February 2014 diff hist +114 Quick Start →Examples
- 11:1811:18, 26 February 2014 diff hist −1 Quick Start →Examples
- 11:1711:17, 26 February 2014 diff hist +8 Quick Start No edit summary
- 11:1611:16, 26 February 2014 diff hist −88 Quick Start No edit summary
- 11:1311:13, 26 February 2014 diff hist −146 Quick Start →Download and prepare
7 February 2014
- 15:1615:16, 7 February 2014 diff hist +56 Abbababa →Output
- 15:1515:15, 7 February 2014 diff hist +95 Abbababa →Output
- 13:0013:00, 7 February 2014 diff hist −4 HWE and Inbreeding estimates No edit summary
- 12:3012:30, 7 February 2014 diff hist −100 HWE and Inbreeding estimates No edit summary
6 February 2014
- 09:4309:43, 6 February 2014 diff hist +93 User:Thorfinn No edit summary
3 February 2014
- 16:2616:26, 3 February 2014 diff hist +59 User:Thorfinn No edit summary
- 16:0216:02, 3 February 2014 diff hist +147 User:Thorfinn No edit summary
30 January 2014
- 19:0619:06, 30 January 2014 diff hist +38 User:Thorfinn No edit summary
- 18:1418:14, 30 January 2014 diff hist +76 User:Thorfinn No edit summary
- 17:4217:42, 30 January 2014 diff hist −1 Fasta No edit summary
- 17:4217:42, 30 January 2014 diff hist −1 Major Minor No edit summary
3 January 2014
- 15:1315:13, 3 January 2014 diff hist +2 Error estimation →Method 1
- 15:1315:13, 3 January 2014 diff hist +260 Error estimation →Method 1
- 15:0815:08, 3 January 2014 diff hist +74 Error estimation →Method 1
- 15:0615:06, 3 January 2014 diff hist +381 Error estimation →Method 1
- 14:5414:54, 3 January 2014 diff hist +2 Error estimation →Method 1
- 14:5314:53, 3 January 2014 diff hist +124 Error estimation →Method 1
- 14:4814:48, 3 January 2014 diff hist +22 Error estimation →Method 2
- 14:4714:47, 3 January 2014 diff hist −201 Error estimation →Method 2
- 14:4114:41, 3 January 2014 diff hist +127 Error estimation →Method 2
- 14:3914:39, 3 January 2014 diff hist +179 Error estimation →Method 2
- 14:3214:32, 3 January 2014 diff hist +430 Error estimation →Method 2
- 14:1914:19, 3 January 2014 diff hist +22 Error estimation →Method 2
- 14:1614:16, 3 January 2014 diff hist +847 N Orlando2013 Created page with "Orlando, L, Ginolhac, A, Zhang, G, Froese, D, Albrechtsen, A, Stiller, M, Schubert, M, Cappellini, E, Petersen, B, Moltke, I, Johnson, PL, Fumagalli, M, Vilstrup, JT, Raghavan..."
- 14:1614:16, 3 January 2014 diff hist +144 Citing angsd →Methods
- 14:1214:12, 3 January 2014 diff hist −77 User:Albrecht No edit summary
- 14:1214:12, 3 January 2014 diff hist −32 Abbababa No edit summary
- 14:1114:11, 3 January 2014 diff hist +3 Abbababa No edit summary
- 14:0814:08, 3 January 2014 diff hist +46 Abbababa →Brief Overview
- 13:1813:18, 3 January 2014 diff hist −10 Error estimation No edit summary
- 13:1713:17, 3 January 2014 diff hist −10 Genotype Likelihoods No edit summary
- 13:1613:16, 3 January 2014 diff hist −15 Depth No edit summary current
- 13:1513:15, 3 January 2014 diff hist −14 Abbababa No edit summary
- 13:1413:14, 3 January 2014 diff hist −10 SFS Estimation No edit summary
- 12:5512:55, 3 January 2014 diff hist +8 Quick Start →Examples
- 12:5412:54, 3 January 2014 diff hist +1 Quick Start →Download and prepare
- 12:4512:45, 3 January 2014 diff hist +11 Quick Start →Download and prepare
16 December 2013
- 17:4617:46, 16 December 2013 diff hist +22 User:Thorfinn No edit summary
7 December 2013
5 December 2013
- 16:4016:40, 5 December 2013 diff hist +32 Error estimation No edit summary
- 16:3516:35, 5 December 2013 diff hist 0 Error estimation No edit summary
4 December 2013
- 14:4014:40, 4 December 2013 diff hist +689 Allele Counts →Example
- 14:3214:32, 4 December 2013 diff hist +340 Allele Counts →Filtering
- 14:2714:27, 4 December 2013 diff hist +66 Allele Counts →Brief Overview
- 14:2414:24, 4 December 2013 diff hist +115 Abbababa →Options
2 December 2013
- 18:5518:55, 2 December 2013 diff hist +18 Abbababa →output
- 18:5518:55, 2 December 2013 diff hist +7 Abbababa →Method
- 18:5318:53, 2 December 2013 diff hist 0 N File:Tree.png No edit summary current
- 18:5318:53, 2 December 2013 diff hist +28 Abbababa No edit summary
- 18:4418:44, 2 December 2013 diff hist +55 MediaWiki:Sidebar No edit summary
- 18:4118:41, 2 December 2013 diff hist −15 MediaWiki:Sidebar No edit summary
- 18:4018:40, 2 December 2013 diff hist +22 MediaWiki:Sidebar No edit summary
- 18:3618:36, 2 December 2013 diff hist +1 MediaWiki:Sidebar No edit summary
- 18:3518:35, 2 December 2013 diff hist +56 MediaWiki:Sidebar No edit summary
- 18:2818:28, 2 December 2013 diff hist −51 Abbababa →Example
- 18:2818:28, 2 December 2013 diff hist +6 Abbababa →output
- 18:2418:24, 2 December 2013 diff hist +35 Abbababa →output
- 18:2218:22, 2 December 2013 diff hist +1,555 Abbababa No edit summary
- 18:1518:15, 2 December 2013 diff hist +79 Abbababa →Example
- 18:1318:13, 2 December 2013 diff hist +426 Abbababa No edit summary
- 16:1416:14, 2 December 2013 diff hist +47 Abbababa No edit summary
- 16:1216:12, 2 December 2013 diff hist +12 Abbababa No edit summary
- 16:1116:11, 2 December 2013 diff hist −944 Abbababa No edit summary
- 16:0616:06, 2 December 2013 diff hist +2,257 N Abbababa Created page with "Available from version 0.559+. performs the abbababa test also called the D-statistic. This tests for ancient admixture (or wrong tree topology) <classdiagram type="dir:LR">..."
27 November 2013
- 22:0622:06, 27 November 2013 diff hist −2 Fasta No edit summary
- 22:0522:05, 27 November 2013 diff hist −2 Fasta No edit summary
- 18:5018:50, 27 November 2013 diff hist +39 Fasta No edit summary
- 18:4818:48, 27 November 2013 diff hist +31 Fasta No edit summary
- 18:4718:47, 27 November 2013 diff hist +116 Fasta No edit summary
- 18:4418:44, 27 November 2013 diff hist 0 Fasta No edit summary
- 18:4418:44, 27 November 2013 diff hist +1 Fasta →Example
- 18:4318:43, 27 November 2013 diff hist −5,515 Fasta No edit summary
- 18:3418:34, 27 November 2013 diff hist +6,504 N Fasta Created page with "This option create a fasta file from a sequencing data file. <classdiagram type="dir:LR"> [One bam file{bg:orange}]->[sequencing data|random base (-doFasta 1);consensus base..."
- 18:2418:24, 27 November 2013 diff hist +29 MediaWiki:Sidebar No edit summary
28 June 2013
- 14:0014:00, 28 June 2013 diff hist +2 Association →Score statistic
- 13:5913:59, 28 June 2013 diff hist +104 Association →Score statistic
11 June 2013
- 12:3812:38, 11 June 2013 diff hist +66 Error estimation →Error estimation using an outgroup and an error free individual
22 March 2013
- 19:1219:12, 22 March 2013 diff hist +66 MediaWiki:Sidebar No edit summary
- 19:1019:10, 22 March 2013 diff hist +130 MediaWiki:Sidebar No edit summary
- 16:2716:27, 22 March 2013 diff hist −33 ANGSD No edit summary
27 February 2013
- 12:1112:11, 27 February 2013 diff hist −72 Base quality →options
- 12:1012:10, 27 February 2013 diff hist −67 Error estimation →additional options
- 12:1012:10, 27 February 2013 diff hist −72 Allele Counts →options
- 12:1012:10, 27 February 2013 diff hist −72 Genotype Likelihoods →options
- 12:0812:08, 27 February 2013 diff hist −71 Genotype Likelihoods →options
- 12:0812:08, 27 February 2013 diff hist −72 Genotype Likelihoods →options
13 February 2013
- 11:5011:50, 13 February 2013 diff hist +278 Error estimation →example
12 February 2013
- 18:1218:12, 12 February 2013 diff hist −17 Error estimation →Error estimation using an outgroup and an error free individual
- 18:1218:12, 12 February 2013 diff hist +116 Error estimation →Error estimation using an outgroup and an error free individual
- 18:0618:06, 12 February 2013 diff hist +719 Error estimation →Error estimation using an outgroup and an error free individual
- 17:5317:53, 12 February 2013 diff hist −14 Error estimation method No edit summary current
- 17:5217:52, 12 February 2013 diff hist +1,483 N Error estimation method Created page with " The estimated rates can roughly be intrepreted as relative error rates. That is excess of errors in your sample compare to the error in the perfect indviduals. The idea is th..."
29 January 2013
- 19:1719:17, 29 January 2013 diff hist +1 Depth →Output
17 January 2013
- 20:2320:23, 17 January 2013 diff hist +16 Input →arguments
14 January 2013
4 December 2012
- 19:1019:10, 4 December 2012 diff hist −1,035 Bugs No edit summary
- 18:5818:58, 4 December 2012 diff hist +17 Bugs No edit summary
23 October 2012
- 21:1721:17, 23 October 2012 diff hist 0 MediaWiki:Sidebar No edit summary
- 21:1021:10, 23 October 2012 diff hist −2 MediaWiki:Sidebar No edit summary
- 20:4420:44, 23 October 2012 diff hist −2,321 Change log →Version notes
- 20:3620:36, 23 October 2012 diff hist 0 Citing angsd →Maf estimation from counts of alleles
- 20:3620:36, 23 October 2012 diff hist +2 Citing angsd →Maf estimation from counts of alleles
- 19:0919:09, 23 October 2012 diff hist +29 MediaWiki:Sidebar No edit summary
- 19:0819:08, 23 October 2012 diff hist +33 MediaWiki:Sidebar No edit summary
16 October 2012
- 15:5515:55, 16 October 2012 diff hist 0 MediaWiki:Sidebar No edit summary
- 15:5015:50, 16 October 2012 diff hist +4 Citing angsd →Maf estimation from counts of alleles
- 15:5015:50, 16 October 2012 diff hist −2 Citing angsd →Maf estimation from counts of alleles
- 15:4815:48, 16 October 2012 diff hist +7 MediaWiki:Sidebar No edit summary
- 15:4415:44, 16 October 2012 diff hist −13 Error estimation →example
- 15:4115:41, 16 October 2012 diff hist −380 Installation →Misc folder
10 October 2012
- 21:0021:00, 10 October 2012 diff hist −29 Major Minor →From genotype likelihood data
- 21:0021:00, 10 October 2012 diff hist −1 Major Minor →From alignment data
- 20:5920:59, 10 October 2012 diff hist +17 Major Minor →From genotype probability data
- 20:1020:10, 10 October 2012 diff hist +9 MediaWiki:Sidebar No edit summary
- 20:1020:10, 10 October 2012 diff hist +1 Genotype calling →example
- 20:0920:09, 10 October 2012 diff hist +1,248 Genotype calling →Genotype calling
- 18:3818:38, 10 October 2012 diff hist −143 Genotype calling →Genotype calling
- 16:4916:49, 10 October 2012 diff hist +63 Association →example
- 15:1815:18, 10 October 2012 diff hist +20 Association →example
- 15:1615:16, 10 October 2012 diff hist +40 Association →example
- 15:0215:02, 10 October 2012 diff hist +346 Association →Score statistic
- 15:0015:00, 10 October 2012 diff hist +143 Association →Case control association using allele frequencies
- 14:5014:50, 10 October 2012 diff hist −6 Association No edit summary
- 14:5014:50, 10 October 2012 diff hist +95 Association →Case control association using allele frequencies
- 14:2414:24, 10 October 2012 diff hist +18 MediaWiki:Sidebar No edit summary
- 14:2414:24, 10 October 2012 diff hist +9 MediaWiki:Sidebar No edit summary
- 11:2411:24, 10 October 2012 diff hist +228 Input →genotype probability files
28 September 2012
- 16:2616:26, 28 September 2012 diff hist +1 Input →optional arguments
24 September 2012
- 17:3117:31, 24 September 2012 diff hist −16 Installation →Download
- 15:2915:29, 24 September 2012 diff hist −53 Filters →Selected Sites
- 13:5513:55, 24 September 2012 diff hist +123 Citing angsd →Methods
- 13:3513:35, 24 September 2012 diff hist +260 N Gatk Created page with "McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo MA (2010). The Genome Analysis Toolkit: a MapReduce ..."
- 13:3413:34, 24 September 2012 diff hist +80 Citing angsd No edit summary
- 13:3213:32, 24 September 2012 diff hist +175 N SoapSNP Created page with "Li R, Li Y, Fang X, Yang H, Wang J, Kristiansen K, Wang J. SNP detection for massively parallel whole-genome resequencing. Genome Res. 2009 Jun;19(6):1124-32. Epub 2009 May 6." current
- 13:2813:28, 24 September 2012 diff hist −7 Citing angsd No edit summary
- 13:2813:28, 24 September 2012 diff hist −179 Skotte Blanked the page current
- 13:2713:27, 24 September 2012 diff hist +179 N Skotte2012 Created page with "Line Skotte, Thorfinn Sand Korneliussen, Anders Albrechtsen. Association testing for next-generation sequencing data using score statistics. Genet Epidemiol. 2012 Jul;36(5):43..."
- 13:2513:25, 24 September 2012 diff hist −221 SuYeon Redirected page to Kim2011 current
- 13:2513:25, 24 September 2012 diff hist +242 N Kim2011 Created page with "Kim SY, Lohmueller KE, Albrechtsen A, Li Y, Korneliussen T, Tian G, Grarup N, Jiang T, Andersen G, Witte D, et al., 2011. Estimation of allele frequency and association mappin..."
- 13:0713:07, 24 September 2012 diff hist +26 Filters No edit summary
- 13:0613:06, 24 September 2012 diff hist +24 Filters No edit summary
- 13:0513:05, 24 September 2012 diff hist +72 Filters No edit summary
21 September 2012
- 15:4715:47, 21 September 2012 diff hist +376 N Citing angsd Created page with "Currently there is not publication for angsd. However, many of the method implimented here are published. **Methods** allele estimation from genotype likelihoods ;- doMaf ..."
- 15:4315:43, 21 September 2012 diff hist +29 MediaWiki:Sidebar No edit summary
- 15:2715:27, 21 September 2012 diff hist +1,787 SNP calling No edit summary
- 15:1015:10, 21 September 2012 diff hist −36 MediaWiki:Sidebar No edit summary
20 September 2012
- 15:5015:50, 20 September 2012 diff hist +392 Error estimation No edit summary
19 September 2012
- 18:1518:15, 19 September 2012 diff hist +281 Genotype Likelihoods →output genotype likelihoods
- 18:0318:03, 19 September 2012 diff hist +2,006 Genotype Likelihoods →output genotype likelihoods
- 18:0018:00, 19 September 2012 diff hist +1 Genotype Likelihoods No edit summary
- 17:4817:48, 19 September 2012 diff hist +915 Genotype Likelihoods No edit summary
- 17:3517:35, 19 September 2012 diff hist +36 Genotype Likelihoods →Genotype likelihoods from alignments
- 17:2317:23, 19 September 2012 diff hist +296 Base quality No edit summary
- 17:2217:22, 19 September 2012 diff hist +15 Base quality →Example
- 17:2117:21, 19 September 2012 diff hist −21 Base quality No edit summary
- 17:2017:20, 19 September 2012 diff hist +353 Base quality No edit summary
- 17:1117:11, 19 September 2012 diff hist +196 N Base quality Created page with "=Base quality counts= Counts the number of bases for each quality. ==Example== Print the individuals depth from bam files <pre> ./angsd -out out -doCounts 1 -doQsDist 1 -ba..."
- 17:0317:03, 19 September 2012 diff hist +42 Allele Counts →options
- 16:5816:58, 19 September 2012 diff hist +44 MediaWiki:Sidebar No edit summary
- 16:5616:56, 19 September 2012 diff hist +106 Allele Counts →options
- 16:5316:53, 19 September 2012 diff hist +251 Allele Counts No edit summary
17 September 2012
- 16:1516:15, 17 September 2012 diff hist +6 Genotype Likelihoods →soapSNP
- 16:0416:04, 17 September 2012 diff hist −34 Genotype Likelihoods →Genotype likelihoods from alignments
16 July 2012
- 18:3918:39, 16 July 2012 diff hist +184 Genotype Likelihoods →Samtools
- 18:1618:16, 16 July 2012 diff hist −70 Genotype Likelihoods →soapSNP
22 June 2012
- 16:0016:00, 22 June 2012 diff hist +64 Genotype Likelihoods →Genotype likelihoods from alignments
21 June 2012
- 16:5416:54, 21 June 2012 diff hist +97 Genotype Likelihoods →Genotype likelihoods from alignments
- 11:4511:45, 21 June 2012 diff hist +30 Association →Score statistic
- 11:4211:42, 21 June 2012 diff hist −97 Association →Association study
- 11:3411:34, 21 June 2012 diff hist +1,043 Association →Association
- 10:2310:23, 21 June 2012 diff hist +242 Beagle input →output
- 10:2110:21, 21 June 2012 diff hist +1,687 N Beagle input Created page with "Beagle haplotype imputation and be performed directly on genotype likelhoods. To generate beagle input file use ; -doGlf 2 In order to make this file the major and minor all..."
- 10:1210:12, 21 June 2012 diff hist +32 Association →Association
- 10:1110:11, 21 June 2012 diff hist +271 N Example of a covariate file Created page with "1 0 0 1 <br> 1 0.1 0 0 <br> 2 0 1 0 <br> 2 0 1 0 <br> 2 0.1 0 1 <br> 1 0 0 1 <br> 1 0.3 0 0 <br> 2 0 0 0 <br> 1 0 0 0 <br> 2 0.2 0 1 <br> 1 0 1 0 <br> 1 0 0 0 <br> 1 0.1 0 0 <..." current
- 10:1110:11, 21 June 2012 diff hist −1 Association →Score statistic
- 10:1010:10, 21 June 2012 diff hist +271 N Example of a covariance file Created page with "1 0 0 1 <br> 1 0.1 0 0 <br> 2 0 1 0 <br> 2 0 1 0 <br> 2 0.1 0 1 <br> 1 0 0 1 <br> 1 0.3 0 0 <br> 2 0 0 0 <br> 1 0 0 0 <br> 2 0.2 0 1 <br> 1 0 1 0 <br> 1 0 0 0 <br> 1 0.1 0 0 <..." current
- 10:1010:10, 21 June 2012 diff hist +364 N Example of a quantitative phenotype file Created page with "-999<br> 2.06164722761138<br> -0.091935218675602<br> -0.287527686061831<br> -999<br> -999<br> -1.20996664036026<br> 0.0188541092307412<br> -2.1122713873334<br> -999<br> -1.329..." current