ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Albrecht
Jump to navigation
Jump to search
18 July 2017
- 15:1015:10, 18 July 2017 diff hist −1 HWE test →example
- 15:0815:08, 18 July 2017 diff hist +164 HWE test →example
- 14:5114:51, 18 July 2017 diff hist +2 HWE test →Use as a filter
- 14:5014:50, 18 July 2017 diff hist +13 HWE test No edit summary
- 14:5014:50, 18 July 2017 diff hist −181 HWE test No edit summary
3 March 2017
- 12:1612:16, 3 March 2017 diff hist +170 Filters →Number of non missing individuals
- 11:5811:58, 3 March 2017 diff hist −31 Filters →Extra
- 11:5611:56, 3 March 2017 diff hist +226 Filters →Extra
24 January 2017
- 14:3914:39, 24 January 2017 diff hist −1 Filters →Selected Sites
- 14:2614:26, 24 January 2017 diff hist +151 PCA MDS →Options
- 14:2414:24, 24 January 2017 diff hist +2 PCA MDS →single read sampling approach for PCA or MDS
- 14:2314:23, 24 January 2017 diff hist +263 PCA MDS No edit summary
- 14:1814:18, 24 January 2017 diff hist +1 PCA MDS No edit summary
- 14:1714:17, 24 January 2017 diff hist +26 PCA MDS No edit summary
16 November 2016
- 18:2018:20, 16 November 2016 diff hist +199 Fasta No edit summary
- 18:1918:19, 16 November 2016 diff hist +702 Fasta →Options
- 18:1318:13, 16 November 2016 diff hist +126 Fasta →Brief Overview
14 July 2016
- 16:4616:46, 14 July 2016 diff hist +3 Relatedness →IBS/genotype distribution
- 11:1611:16, 14 July 2016 diff hist +881 Genotype Distribution →Example current
- 11:0211:02, 14 July 2016 diff hist +6,368 Genotype Distribution No edit summary
- 10:4710:47, 14 July 2016 diff hist +94 Genotype Distribution No edit summary
- 10:4310:43, 14 July 2016 diff hist +946 Genotype Distribution No edit summary
- 10:3810:38, 14 July 2016 diff hist +4,100 Genotype Distribution No edit summary
12 July 2016
- 16:2816:28, 12 July 2016 diff hist 0 N File:RatioRel.png No edit summary current
- 16:2816:28, 12 July 2016 diff hist +41 Relatedness →IBS/genotype distribution
- 16:0216:02, 12 July 2016 diff hist +141 Relatedness →IBS/genotype distribution
- 15:5815:58, 12 July 2016 diff hist +302 Relatedness →How to get the IBS pattern
- 15:5515:55, 12 July 2016 diff hist +2 Relatedness No edit summary
- 15:5515:55, 12 July 2016 diff hist +12 N Genotype Distribution Created page with "comming soon"
- 15:5315:53, 12 July 2016 diff hist +299 Relatedness →IBS/genotype distribution
- 15:4715:47, 12 July 2016 diff hist +18 Relatedness No edit summary
- 15:4615:46, 12 July 2016 diff hist +60 Relatedness →IBS/genotype distribution
- 15:4315:43, 12 July 2016 diff hist +126 Relatedness →IBS/genotype distribution
- 15:3015:30, 12 July 2016 diff hist +243 Relatedness No edit summary
- 15:2215:22, 12 July 2016 diff hist +1,185 Relatedness No edit summary
- 15:0615:06, 12 July 2016 diff hist +2 Relatedness →IBS/genotype distribution
- 15:0515:05, 12 July 2016 diff hist +271 Relatedness →IBS/genotype distribution
- 15:0215:02, 12 July 2016 diff hist +87 Relatedness →NGSrelate - estimation of IBD probabilities
- 15:0115:01, 12 July 2016 diff hist −3 Relatedness →IBS/genotype distribution
- 14:5514:55, 12 July 2016 diff hist +444 Relatedness No edit summary
- 14:5314:53, 12 July 2016 diff hist +746 Relatedness No edit summary
- 14:2514:25, 12 July 2016 diff hist +4 Relatedness No edit summary
- 14:2514:25, 12 July 2016 diff hist +4 Relatedness No edit summary
- 14:2514:25, 12 July 2016 diff hist +703 N Relatedness Created page with " * NGSrelate - estimation of kinship coefficients In order to estimate kinship coefficient then population allele frequencies are needed. These can be estimated from data if ..."
- 14:2014:20, 12 July 2016 diff hist +2 MediaWiki:Sidebar No edit summary
- 14:1914:19, 12 July 2016 diff hist +88 MediaWiki:Sidebar No edit summary
7 June 2016
- 17:3317:33, 7 June 2016 diff hist 0 PCA MDS →sampled bases *ibs.gz
31 May 2016
- 14:3114:31, 31 May 2016 diff hist +30 PCA MDS No edit summary
- 13:4713:47, 31 May 2016 diff hist 0 PCA MDS No edit summary
- 13:4613:46, 31 May 2016 diff hist +222 PCA MDS →MDS/PCA using R
16 May 2016
- 13:2113:21, 16 May 2016 diff hist +8 PCA MDS →IBS
- 13:2013:20, 16 May 2016 diff hist +90 PCA MDS →Covariance
- 12:0712:07, 16 May 2016 diff hist 0 PCA MDS →Options
13 May 2016
- 13:3613:36, 13 May 2016 diff hist +188 PCA No edit summary
11 May 2016
- 10:3210:32, 11 May 2016 diff hist −95 PCA MDS →samples base *.ibsMat
28 April 2016
- 11:1611:16, 28 April 2016 diff hist +93 Genotype Likelihoods →SYK (Kim et al.)
- 11:1311:13, 28 April 2016 diff hist +11 Genotype Likelihoods →SYK (Kim et al.)
27 April 2016
- 18:5318:53, 27 April 2016 diff hist +2 PCA MDS →Output
- 18:5218:52, 27 April 2016 diff hist +6 PCA MDS →MDS/PCA using R
- 18:5118:51, 27 April 2016 diff hist 0 N File:PCA MDS.png No edit summary current
- 18:5118:51, 27 April 2016 diff hist 0 PCA MDS →MDS/PCA using R
- 18:4918:49, 27 April 2016 diff hist 0 File:IBD PCA.pdf Albrecht uploaded a new version of "File:IBD PCA.pdf" current
- 17:0717:07, 27 April 2016 diff hist +4 PCA MDS →MDS/PCA using R
- 17:0717:07, 27 April 2016 diff hist 0 N File:IBD PCA.pdf No edit summary
- 17:0617:06, 27 April 2016 diff hist +18 PCA MDS →MDS/PCA using R
- 17:0317:03, 27 April 2016 diff hist +406 PCA MDS No edit summary
- 17:0117:01, 27 April 2016 diff hist +54 PCA MDS →Model
- 16:4816:48, 27 April 2016 diff hist +1,455 PCA MDS →Output
- 16:4516:45, 27 April 2016 diff hist −160 PCA MDS →samples base *ibsMat
- 16:4416:44, 27 April 2016 diff hist +1,454 PCA MDS →Output
- 16:4316:43, 27 April 2016 diff hist +96 PCA MDS →Output
- 16:4216:42, 27 April 2016 diff hist −272 PCA MDS →Output
- 16:4116:41, 27 April 2016 diff hist +2,921 PCA MDS →Output
- 16:3416:34, 27 April 2016 diff hist −87 PCA MDS No edit summary
- 16:3316:33, 27 April 2016 diff hist +18 PCA MDS →Options
- 16:3216:32, 27 April 2016 diff hist +175 PCA MDS →Options
- 12:4712:47, 27 April 2016 diff hist +4,143 PCA MDS →single read sampling approach for PCA or MDS
- 12:2412:24, 27 April 2016 diff hist +143 PCA MDS No edit summary
- 12:2312:23, 27 April 2016 diff hist 0 PCA No edit summary
- 12:2212:22, 27 April 2016 diff hist +632 PCA No edit summary
- 12:2212:22, 27 April 2016 diff hist +48 N PCA MDS Created page with "= single read sampling approach for PCA or MDS ="
- 12:1212:12, 27 April 2016 diff hist +62 MediaWiki:Sidebar No edit summary
10 April 2016
- 18:0218:02, 10 April 2016 diff hist +8 HWE test No edit summary
- 17:5917:59, 10 April 2016 diff hist +207 HWE test No edit summary
- 17:4817:48, 10 April 2016 diff hist +2 HWE and Inbreeding estimates →Site estimate of inbreeding coefficient (HWE test)
- 17:2617:26, 10 April 2016 diff hist +5 HWE test No edit summary
- 17:2617:26, 10 April 2016 diff hist +184 HWE test →Use as a filter
- 17:1617:16, 10 April 2016 diff hist +567 HWE test No edit summary
- 17:0617:06, 10 April 2016 diff hist 0 HWE and Inbreeding estimates →Site estimate of inbreeding coefficient (HWE test)
- 17:0517:05, 10 April 2016 diff hist 0 HWE test →Output
- 17:0417:04, 10 April 2016 diff hist +7 HWE test →Output
- 17:0417:04, 10 April 2016 diff hist +439 HWE test →Output
- 17:0017:00, 10 April 2016 diff hist +1,847 N HWE test Created page with "Test for Hardy Weinberg equilibrium based on genotype likelihoods. This class works both as a filter for all other classes and outputs the results in a file. If you want to ..."
- 16:4516:45, 10 April 2016 diff hist +32 MediaWiki:Sidebar No edit summary
14 March 2016
- 10:3310:33, 14 March 2016 diff hist 0 Haploid calling →Output
- 10:3310:33, 14 March 2016 diff hist +168 Haploid calling →Output
13 March 2016
- 13:3413:34, 13 March 2016 diff hist +2 Haploid calling No edit summary
- 13:3313:33, 13 March 2016 diff hist 0 Haploid calling No edit summary
11 March 2016
- 11:4611:46, 11 March 2016 diff hist +2,758 Abbababa No edit summary current
8 March 2016
- 12:1212:12, 8 March 2016 diff hist −71 Association →Case control association using allele frequencies
15 February 2016
- 11:2111:21, 15 February 2016 diff hist +81 Abbababa No edit summary
8 February 2016
- 17:2417:24, 8 February 2016 diff hist +125 Fasta →EBD
- 17:1917:19, 8 February 2016 diff hist −2 Fasta →EBD
- 17:1917:19, 8 February 2016 diff hist −143 Fasta No edit summary
- 17:1817:18, 8 February 2016 diff hist +3 Fasta No edit summary
- 17:1717:17, 8 February 2016 diff hist +2 Fasta →Brief Overview
- 17:1517:15, 8 February 2016 diff hist +131 Fasta →Brief Overview
- 16:4016:40, 8 February 2016 diff hist +246 Fasta →Options
28 January 2016
- 11:1711:17, 28 January 2016 diff hist +115 Haploid calling No edit summary
22 January 2016
- 14:3514:35, 22 January 2016 diff hist +3 Abbababa →Options
- 14:3514:35, 22 January 2016 diff hist +346 Abbababa No edit summary
- 12:0112:01, 22 January 2016 diff hist +54 Abbababa →Example
- 11:4711:47, 22 January 2016 diff hist +27 Plink →NB
- 11:4611:46, 22 January 2016 diff hist −1 Plink →Example
- 11:4411:44, 22 January 2016 diff hist +10 Genotype calling →Example
3 January 2016
- 19:2419:24, 3 January 2016 diff hist +3 MediaWiki:Sidebar No edit summary
- 19:2119:21, 3 January 2016 diff hist +6 MediaWiki:Sidebar No edit summary
- 16:2816:28, 3 January 2016 diff hist −32 Haploid calling →Output
- 16:2716:27, 3 January 2016 diff hist +2,256 N Haploid calling Created page with "Simple haploid output based on sampling or consensus. __TOC__ <classdiagram type="dir:LR"> [BAM files{bg:orange}]->[Sequence data|Random base;Consensus base] [sequence da..."
- 16:1516:15, 3 January 2016 diff hist +35 MediaWiki:Sidebar No edit summary
16 December 2015
- 17:3017:30, 16 December 2015 diff hist +59 MsToGlf No edit summary
4 December 2015
- 17:1117:11, 4 December 2015 diff hist −1 Filters →Extra
- 17:1117:11, 4 December 2015 diff hist −98 Filters →Extra
- 16:2316:23, 4 December 2015 diff hist +18 Input →Genotype Probability Files
- 16:2216:22, 4 December 2015 diff hist 0 Input →Tutorial
- 16:2216:22, 4 December 2015 diff hist +1,823 Input →-glf
- 16:1816:18, 4 December 2015 diff hist +790 Supersim No edit summary current
- 15:5515:55, 4 December 2015 diff hist −1 Input →Arguments
- 15:5515:55, 4 December 2015 diff hist 0 Input →Example
- 15:5415:54, 4 December 2015 diff hist 0 Input →Example
- 15:5415:54, 4 December 2015 diff hist 0 Input →Tutorial
- 15:5315:53, 4 December 2015 diff hist +4,725 Input →Genotype Probability Files
- 15:5215:52, 4 December 2015 diff hist −488 Input →VCF files
- 15:4615:46, 4 December 2015 diff hist +4,114 Input →VCF files
- 15:1715:17, 4 December 2015 diff hist −161 Input →Genotype Probability Files
- 15:1615:16, 4 December 2015 diff hist +29 Input No edit summary
- 15:1315:13, 4 December 2015 diff hist +788 Input →Genotype Probability Files
- 14:5614:56, 4 December 2015 diff hist +51 Input →Pileup files
- 14:5214:52, 4 December 2015 diff hist −5 Input →Tutorial
- 14:3314:33, 4 December 2015 diff hist +43 Input →Genotype Probability Files
- 14:2314:23, 4 December 2015 diff hist −12 Input No edit summary
- 14:2114:21, 4 December 2015 diff hist +11 Input No edit summary
- 14:1914:19, 4 December 2015 diff hist +62 Input →Pileup files
- 13:3113:31, 4 December 2015 diff hist +2,787 Input →Pileup files
- 12:0512:05, 4 December 2015 diff hist +14 Input →BAM/CRAM
- 12:0112:01, 4 December 2015 diff hist 0 Input No edit summary
- 12:0112:01, 4 December 2015 diff hist +535 Input →BAM/CRAM
- 11:4811:48, 4 December 2015 diff hist +17 Input →Sequence data (BAM/CRAM/mpileup)
- 11:3711:37, 4 December 2015 diff hist +48 Input →BAM/CRAM
- 11:3711:37, 4 December 2015 diff hist +120 Input →Sequence data (BAM/CRAM/mpileup)
- 11:2811:28, 4 December 2015 diff hist −100 Input No edit summary
- 11:2711:27, 4 December 2015 diff hist +234 Input No edit summary
- 11:2211:22, 4 December 2015 diff hist +12 Input No edit summary
- 11:2011:20, 4 December 2015 diff hist −367 Quick Start No edit summary
- 11:1911:19, 4 December 2015 diff hist −161 Quick Start →Examples
- 10:5610:56, 4 December 2015 diff hist +12 Quick Start →Ancestral fasta file for hg19
- 10:5210:52, 4 December 2015 diff hist +33 Quick Start No edit summary
- 10:4910:49, 4 December 2015 diff hist −92 MediaWiki:Sitenotice No edit summary
19 November 2015
- 17:1317:13, 19 November 2015 diff hist +35 MediaWiki:Sidebar No edit summary
12 November 2015
- 20:1920:19, 12 November 2015 diff hist +103 MsToGlf No edit summary
11 July 2015
- 15:5115:51, 11 July 2015 diff hist +811 Contamination No edit summary current
28 June 2015
- 14:0114:01, 28 June 2015 diff hist +1 Plink No edit summary
5 April 2015
- 19:5219:52, 5 April 2015 diff hist +318 Genotype calling →options
15 December 2014
- 19:5019:50, 15 December 2014 diff hist −8 SYKmaf Undo revision 2344 by Albrecht (talk) current
- 19:4919:49, 15 December 2014 diff hist +8 SYKmaf →ML estimator with unknown minor
25 August 2014
- 13:5813:58, 25 August 2014 diff hist −566 Association →Output
- 13:5613:56, 25 August 2014 diff hist +228 Association →Score statistic
- 13:4913:49, 25 August 2014 diff hist +201 Change log →Latest
27 June 2014
- 14:3514:35, 27 June 2014 diff hist −1,005 Contamination →method
- 14:3514:35, 27 June 2014 diff hist +1,005 N Rasmussen2011 Created page with "[http://www.ncbi.nlm.nih.gov/entrez?Db=pubmed&Cmd=ShowDetailView&uid=21940856 PMID 21940856], [http://www.bioinformatics.org/texmed/cgi-bin/list.cgi?PMID=21940856 bibtex ] Ras..." current
- 14:3414:34, 27 June 2014 diff hist +59 Citing angsd No edit summary
- 14:3214:32, 27 June 2014 diff hist +174 Orlando2013 No edit summary current
- 14:2914:29, 27 June 2014 diff hist +1,084 Contamination No edit summary
- 14:0614:06, 27 June 2014 diff hist +35 Contamination No edit summary
- 13:5913:59, 27 June 2014 diff hist +401 Contamination →Output
26 June 2014
- 13:2213:22, 26 June 2014 diff hist +14 Thetas,Tajima,Neutrality tests →Example
- 13:1813:18, 26 June 2014 diff hist −65 Thetas,Tajima,Neutrality tests →Example
- 13:1613:16, 26 June 2014 diff hist +203 Thetas,Tajima,Neutrality tests →Example
- 12:4512:45, 26 June 2014 diff hist +131 Major Minor No edit summary
- 12:4212:42, 26 June 2014 diff hist +53 Major Minor →Pre specified Major using a reference
- 12:4112:41, 26 June 2014 diff hist −1 Major Minor →Pre specified Major using a reference
- 12:3412:34, 26 June 2014 diff hist −34 User:Albrecht Blanked the page current
24 June 2014
- 12:4612:46, 24 June 2014 diff hist +3 Input →Brief Overview
13 May 2014
- 17:1517:15, 13 May 2014 diff hist +556 Genotype Likelihoods →Output
23 April 2014
- 16:1916:19, 23 April 2014 diff hist +190 Major Minor No edit summary
- 16:1616:16, 23 April 2014 diff hist −111 MediaWiki:Sitenotice No edit summary
- 16:1516:15, 23 April 2014 diff hist +12 ANGSD No edit summary
6 March 2014
- 13:2613:26, 6 March 2014 diff hist −8 SFS Estimation →How to plot
- 13:2513:25, 6 March 2014 diff hist −6 SFS Estimation →How to plot
- 13:2513:25, 6 March 2014 diff hist −19 SFS Estimation →Format specification of binary .saf file
- 13:2113:21, 6 March 2014 diff hist −56 SFS Estimation →Folded spectra
- 13:1613:16, 6 March 2014 diff hist +49 SFS Estimation →Interpretation of the emOptim2 output file
- 13:1513:15, 6 March 2014 diff hist +347 SFS Estimation →Options
- 12:2712:27, 6 March 2014 diff hist +148 SFS Estimation →Options
- 12:2612:26, 6 March 2014 diff hist +52 SFS Estimation →Posterior per-site distributions of the sample allele frequency
- 12:2312:23, 6 March 2014 diff hist +13 SFS Estimation →Interpretation of output file
- 12:2312:23, 6 March 2014 diff hist +47 SFS Estimation →Interpretation of output file
- 12:2012:20, 6 March 2014 diff hist −3 SFS Estimation →Example
- 12:2012:20, 6 March 2014 diff hist +155 SFS Estimation →Example
- 12:1812:18, 6 March 2014 diff hist +188 SFS Estimation →Brief Overview
- 12:1712:17, 6 March 2014 diff hist −64 SFS Estimation →Example
- 12:1612:16, 6 March 2014 diff hist +98 SFS Estimation →Example
- 12:1512:15, 6 March 2014 diff hist −1 SFS Estimation →Example
- 12:1112:11, 6 March 2014 diff hist +1 SFS Estimation →How to plot
- 12:1012:10, 6 March 2014 diff hist +43 SFS Estimation →How to plot
- 12:0912:09, 6 March 2014 diff hist −2,070 SFS Estimation →Theory
- 12:0912:09, 6 March 2014 diff hist −11 RealSFSmethod →Theory
- 12:0812:08, 6 March 2014 diff hist +2,068 N RealSFSmethod Created page with "=Theory= <pre> We will try to elaborate on the theory behind the methods. Below is only a preliminary version of the theory. </pre> This method is described in Nielsen2012..."
- 12:0812:08, 6 March 2014 diff hist +6 SFS Estimation No edit summary
- 12:0812:08, 6 March 2014 diff hist +2 SFS Estimation No edit summary
- 12:0812:08, 6 March 2014 diff hist +64 SFS Estimation No edit summary
- 12:0612:06, 6 March 2014 diff hist +161 SFS Estimation →Options
- 12:0312:03, 6 March 2014 diff hist +67 SFS Estimation No edit summary
- 11:5311:53, 6 March 2014 diff hist −9 Thetas,Tajima,Neutrality tests →Example
- 11:5211:52, 6 March 2014 diff hist −9 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 11:5211:52, 6 March 2014 diff hist +4 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 11:5111:51, 6 March 2014 diff hist +4 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 11:5011:50, 6 March 2014 diff hist −4 Thetas,Tajima,Neutrality tests →Example
- 11:5011:50, 6 March 2014 diff hist +16 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 11:4611:46, 6 March 2014 diff hist +26 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 11:4411:44, 6 March 2014 diff hist +170 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 11:4011:40, 6 March 2014 diff hist +33 Thetas,Tajima,Neutrality tests →Sliding Window example
- 11:3811:38, 6 March 2014 diff hist +129 Thetas,Tajima,Neutrality tests →.thetas.gz is
- 11:3711:37, 6 March 2014 diff hist +67 Thetas,Tajima,Neutrality tests →Example
- 11:3611:36, 6 March 2014 diff hist −18 Thetas,Tajima,Neutrality tests →Sliding Window example
- 11:2711:27, 6 March 2014 diff hist +1 Thetas,Tajima,Neutrality tests →Example
- 11:2511:25, 6 March 2014 diff hist +72 Thetas,Tajima,Neutrality tests →Example
- 11:0911:09, 6 March 2014 diff hist +39 Thetas,Tajima,Neutrality tests →Example
5 March 2014
- 20:1520:15, 5 March 2014 diff hist +1 Filters →Extra
- 20:1420:14, 5 March 2014 diff hist +16 Plink →Example
- 20:1220:12, 5 March 2014 diff hist −11 Filters →Extra
- 20:1220:12, 5 March 2014 diff hist −2 Plink →Example
- 20:0920:09, 5 March 2014 diff hist 0 Plink No edit summary
- 20:0820:08, 5 March 2014 diff hist 0 Plink →Example
- 20:0120:01, 5 March 2014 diff hist −5 Plink No edit summary
- 20:0020:00, 5 March 2014 diff hist +38 MediaWiki:Sidebar No edit summary
- 19:3819:38, 5 March 2014 diff hist +29 Association →Example with imputation (using BEAGLE)
- 19:3619:36, 5 March 2014 diff hist +556 Association →Example with imputation (using BEAGLE)
- 19:3519:35, 5 March 2014 diff hist +279 Input →Genotype Probability Files
- 19:1819:18, 5 March 2014 diff hist −998 Bugs No edit summary
- 19:1019:10, 5 March 2014 diff hist +418 Association →Example
- 19:0619:06, 5 March 2014 diff hist −39 MediaWiki:Sidebar No edit summary
- 19:0519:05, 5 March 2014 diff hist +405 Beagle input →output
- 18:5918:59, 5 March 2014 diff hist −29 Beagle input →Example
- 18:5818:58, 5 March 2014 diff hist +139 Beagle input No edit summary
- 18:5418:54, 5 March 2014 diff hist −45 SNP calling No edit summary
26 February 2014
- 20:0420:04, 26 February 2014 diff hist +11 SNP calling No edit summary
- 18:4318:43, 26 February 2014 diff hist −43 Allele Frequencies →.mafs
- 18:4318:43, 26 February 2014 diff hist −1 Allele Frequencies →.mafs
- 18:4318:43, 26 February 2014 diff hist +8 Allele Frequencies →.mafs
- 18:4018:40, 26 February 2014 diff hist +105 Allele Frequencies →.mafs
- 18:3718:37, 26 February 2014 diff hist −606 Allele Frequencies →.mafs
- 18:3618:36, 26 February 2014 diff hist +44 Allele Frequencies →Allele Frequency estimation
- 18:3618:36, 26 February 2014 diff hist +974 N SYKmaf Created page with "==ML estimator with known minor== First infer the Major and Minor allele and then use BFGS (-doMaf 1) optimazation or the EM algorithm (..."
- 18:3518:35, 26 February 2014 diff hist +41 Allele Frequencies →Allele Frequency estimation
- 18:3518:35, 26 February 2014 diff hist −985 Allele Frequencies →Theory
- 18:3418:34, 26 February 2014 diff hist +64 Allele Frequencies No edit summary
- 18:3218:32, 26 February 2014 diff hist +11 User:Thorfinn No edit summary
- 18:3218:32, 26 February 2014 diff hist +867 User:Thorfinn →Anders changes to version 583
- 18:1318:13, 26 February 2014 diff hist +330 User:Thorfinn No edit summary
- 17:4717:47, 26 February 2014 diff hist +57 Allele Frequencies →Example
- 17:4617:46, 26 February 2014 diff hist −19 Allele Frequencies No edit summary
- 17:4517:45, 26 February 2014 diff hist −420 Allele Frequencies No edit summary
- 17:4417:44, 26 February 2014 diff hist +395 N PostFreq Created page with "==Estimator from genotype probabilities== If the genotype probabilities are known the frequencies can be estimated by summing up the posterior probabilities <math> p(G=g|D)</..." current
- 17:4417:44, 26 February 2014 diff hist −93 Allele Frequencies No edit summary
- 17:4117:41, 26 February 2014 diff hist +5 Allele Frequencies →Example
- 17:3917:39, 26 February 2014 diff hist +824 Allele Frequencies No edit summary
- 17:2517:25, 26 February 2014 diff hist +254 Error estimation No edit summary
- 17:2317:23, 26 February 2014 diff hist −75 Error estimation →Theory
- 17:2117:21, 26 February 2014 diff hist +15 Error estimation →Example
- 17:1917:19, 26 February 2014 diff hist +34 Error estimation →Options
- 17:1817:18, 26 February 2014 diff hist +15 Error estimation →Options
- 17:1617:16, 26 February 2014 diff hist +314 Error estimation →Error estimation using an outgroup and an error free individual
- 17:1517:15, 26 February 2014 diff hist +2,063 N ErrorPerfect Created page with "==Method 2== The method was use in Orlando2013 and is described in details in supplementary 4.4 The estimated rates can roughly be intrepreted as relative error rates. T..." current
- 17:1317:13, 26 February 2014 diff hist +28 Error estimation →Error estimation using an outgroup and an error free individual
- 17:1317:13, 26 February 2014 diff hist −2,065 Error estimation →Method 2
- 17:1217:12, 26 February 2014 diff hist −13 ErrorSykMethod No edit summary current
- 17:1217:12, 26 February 2014 diff hist +854 N ErrorSykMethod Created page with "==Method 1== The method is described in kim2011 and work by simultaneously estimating allele frequencies, genotype likelihoods and the error rates. The likelihood of t..."
- 17:1217:12, 26 February 2014 diff hist +69 Error estimation →Error estimation from polymorphic sites
- 17:1117:11, 26 February 2014 diff hist −856 Error estimation →Method 1
- 17:0817:08, 26 February 2014 diff hist +48 Error estimation →Output
- 17:0217:02, 26 February 2014 diff hist 0 Error estimation No edit summary
- 16:1716:17, 26 February 2014 diff hist +1 Error estimation No edit summary
- 16:1616:16, 26 February 2014 diff hist +11 Error estimation →Example
- 16:1216:12, 26 February 2014 diff hist +280 Error estimation No edit summary
- 16:0716:07, 26 February 2014 diff hist +16 Error estimation No edit summary
- 15:3315:33, 26 February 2014 diff hist 0 Major Minor No edit summary
- 15:2915:29, 26 February 2014 diff hist +503 Major Minor No edit summary
- 15:2315:23, 26 February 2014 diff hist +256 Major Minor →Details
- 15:1915:19, 26 February 2014 diff hist −29 Major Minor →From counts of data
- 15:1915:19, 26 February 2014 diff hist −1 Major Minor →From genotype likelihood data
- 15:1515:15, 26 February 2014 diff hist +1,283 N MajorMinor Method Created page with "==From Genotype Likelihoods== Assuming that the considered site is diallelic, we infer those two alleles using the genotype likelihoods. Let <math>\{M,m\}</math> denote the tw..." current
- 15:1515:15, 26 February 2014 diff hist +52 Major Minor →From genotype likelihood data
- 15:1415:14, 26 February 2014 diff hist −1,246 Major Minor No edit summary
- 15:0315:03, 26 February 2014 diff hist −1,610 Genotype Likelihoods →Theory
- 15:0215:02, 26 February 2014 diff hist −10 Genotype Likelihoods →GATK genotype likelihoods
- 15:0115:01, 26 February 2014 diff hist −31 Genotype Likelihoods →Theory
- 14:5914:59, 26 February 2014 diff hist +111 Genotype Likelihoods No edit summary
- 14:5714:57, 26 February 2014 diff hist −13 Genotype Likelihoods →SOAPsnp
- 14:5714:57, 26 February 2014 diff hist −87 Genotype Likelihoods No edit summary
- 14:4514:45, 26 February 2014 diff hist −16 MediaWiki:Sidebar No edit summary
- 14:4314:43, 26 February 2014 diff hist −14 Fasta →Options
- 14:4114:41, 26 February 2014 diff hist −149 Fasta No edit summary
- 14:2114:21, 26 February 2014 diff hist +6 Fasta No edit summary
- 14:1714:17, 26 February 2014 diff hist +19 Allele Counts No edit summary
- 13:5913:59, 26 February 2014 diff hist +123 Association No edit summary
- 13:5113:51, 26 February 2014 diff hist +1,357 Association No edit summary
- 13:1913:19, 26 February 2014 diff hist +34 Abbababa →Options
- 13:1613:16, 26 February 2014 diff hist +73 User:Thorfinn No edit summary
- 13:1513:15, 26 February 2014 diff hist +10 Thetas,Tajima,Neutrality tests No edit summary
- 13:1413:14, 26 February 2014 diff hist +9 Filters →Filters for Bam files
- 13:1313:13, 26 February 2014 diff hist +33 Filters →Examples
- 12:1312:13, 26 February 2014 diff hist −4 Filters →Examples
- 12:1212:12, 26 February 2014 diff hist +6 Filters →Examples
- 12:1212:12, 26 February 2014 diff hist +435 Filters →Examples
- 12:0512:05, 26 February 2014 diff hist +21 Filters →Extra
- 12:0412:04, 26 February 2014 diff hist −1,846 Filters No edit summary
- 11:4411:44, 26 February 2014 diff hist +65 Input No edit summary
- 11:3211:32, 26 February 2014 diff hist +114 Quick Start →Examples
- 11:1811:18, 26 February 2014 diff hist −1 Quick Start →Examples
- 11:1711:17, 26 February 2014 diff hist +8 Quick Start No edit summary
- 11:1611:16, 26 February 2014 diff hist −88 Quick Start No edit summary
- 11:1311:13, 26 February 2014 diff hist −146 Quick Start →Download and prepare
7 February 2014
- 15:1615:16, 7 February 2014 diff hist +56 Abbababa →Output
- 15:1515:15, 7 February 2014 diff hist +95 Abbababa →Output
- 13:0013:00, 7 February 2014 diff hist −4 HWE and Inbreeding estimates No edit summary
- 12:3012:30, 7 February 2014 diff hist −100 HWE and Inbreeding estimates No edit summary
6 February 2014
- 09:4309:43, 6 February 2014 diff hist +93 User:Thorfinn No edit summary
3 February 2014
- 16:2616:26, 3 February 2014 diff hist +59 User:Thorfinn No edit summary
- 16:0216:02, 3 February 2014 diff hist +147 User:Thorfinn No edit summary
30 January 2014
- 19:0619:06, 30 January 2014 diff hist +38 User:Thorfinn No edit summary
- 18:1418:14, 30 January 2014 diff hist +76 User:Thorfinn No edit summary
- 17:4217:42, 30 January 2014 diff hist −1 Fasta No edit summary
- 17:4217:42, 30 January 2014 diff hist −1 Major Minor No edit summary
3 January 2014
- 15:1315:13, 3 January 2014 diff hist +2 Error estimation →Method 1
- 15:1315:13, 3 January 2014 diff hist +260 Error estimation →Method 1
- 15:0815:08, 3 January 2014 diff hist +74 Error estimation →Method 1
- 15:0615:06, 3 January 2014 diff hist +381 Error estimation →Method 1
- 14:5414:54, 3 January 2014 diff hist +2 Error estimation →Method 1
- 14:5314:53, 3 January 2014 diff hist +124 Error estimation →Method 1
- 14:4814:48, 3 January 2014 diff hist +22 Error estimation →Method 2
- 14:4714:47, 3 January 2014 diff hist −201 Error estimation →Method 2
- 14:4114:41, 3 January 2014 diff hist +127 Error estimation →Method 2
- 14:3914:39, 3 January 2014 diff hist +179 Error estimation →Method 2
- 14:3214:32, 3 January 2014 diff hist +430 Error estimation →Method 2
- 14:1914:19, 3 January 2014 diff hist +22 Error estimation →Method 2
- 14:1614:16, 3 January 2014 diff hist +847 N Orlando2013 Created page with "Orlando, L, Ginolhac, A, Zhang, G, Froese, D, Albrechtsen, A, Stiller, M, Schubert, M, Cappellini, E, Petersen, B, Moltke, I, Johnson, PL, Fumagalli, M, Vilstrup, JT, Raghavan..."
- 14:1614:16, 3 January 2014 diff hist +144 Citing angsd →Methods
- 14:1214:12, 3 January 2014 diff hist −77 User:Albrecht No edit summary
- 14:1214:12, 3 January 2014 diff hist −32 Abbababa No edit summary
- 14:1114:11, 3 January 2014 diff hist +3 Abbababa No edit summary
- 14:0814:08, 3 January 2014 diff hist +46 Abbababa →Brief Overview
- 13:1813:18, 3 January 2014 diff hist −10 Error estimation No edit summary
- 13:1713:17, 3 January 2014 diff hist −10 Genotype Likelihoods No edit summary
- 13:1613:16, 3 January 2014 diff hist −15 Depth No edit summary current
- 13:1513:15, 3 January 2014 diff hist −14 Abbababa No edit summary
- 13:1413:14, 3 January 2014 diff hist −10 SFS Estimation No edit summary
- 12:5512:55, 3 January 2014 diff hist +8 Quick Start →Examples
- 12:5412:54, 3 January 2014 diff hist +1 Quick Start →Download and prepare
- 12:4512:45, 3 January 2014 diff hist +11 Quick Start →Download and prepare
16 December 2013
- 17:4617:46, 16 December 2013 diff hist +22 User:Thorfinn No edit summary
7 December 2013
5 December 2013
- 16:4016:40, 5 December 2013 diff hist +32 Error estimation No edit summary
- 16:3516:35, 5 December 2013 diff hist 0 Error estimation No edit summary
4 December 2013
- 14:4014:40, 4 December 2013 diff hist +689 Allele Counts →Example
- 14:3214:32, 4 December 2013 diff hist +340 Allele Counts →Filtering
- 14:2714:27, 4 December 2013 diff hist +66 Allele Counts →Brief Overview
- 14:2414:24, 4 December 2013 diff hist +115 Abbababa →Options
2 December 2013
- 18:5518:55, 2 December 2013 diff hist +18 Abbababa →output
- 18:5518:55, 2 December 2013 diff hist +7 Abbababa →Method
- 18:5318:53, 2 December 2013 diff hist 0 N File:Tree.png No edit summary current
- 18:5318:53, 2 December 2013 diff hist +28 Abbababa No edit summary
- 18:4418:44, 2 December 2013 diff hist +55 MediaWiki:Sidebar No edit summary
- 18:4118:41, 2 December 2013 diff hist −15 MediaWiki:Sidebar No edit summary
- 18:4018:40, 2 December 2013 diff hist +22 MediaWiki:Sidebar No edit summary
- 18:3618:36, 2 December 2013 diff hist +1 MediaWiki:Sidebar No edit summary
- 18:3518:35, 2 December 2013 diff hist +56 MediaWiki:Sidebar No edit summary
- 18:2818:28, 2 December 2013 diff hist −51 Abbababa →Example
- 18:2818:28, 2 December 2013 diff hist +6 Abbababa →output
- 18:2418:24, 2 December 2013 diff hist +35 Abbababa →output
- 18:2218:22, 2 December 2013 diff hist +1,555 Abbababa No edit summary
- 18:1518:15, 2 December 2013 diff hist +79 Abbababa →Example
- 18:1318:13, 2 December 2013 diff hist +426 Abbababa No edit summary
- 16:1416:14, 2 December 2013 diff hist +47 Abbababa No edit summary
- 16:1216:12, 2 December 2013 diff hist +12 Abbababa No edit summary
- 16:1116:11, 2 December 2013 diff hist −944 Abbababa No edit summary
- 16:0616:06, 2 December 2013 diff hist +2,257 N Abbababa Created page with "Available from version 0.559+. performs the abbababa test also called the D-statistic. This tests for ancient admixture (or wrong tree topology) <classdiagram type="dir:LR">..."
27 November 2013
- 22:0622:06, 27 November 2013 diff hist −2 Fasta No edit summary
- 22:0522:05, 27 November 2013 diff hist −2 Fasta No edit summary
- 18:5018:50, 27 November 2013 diff hist +39 Fasta No edit summary
- 18:4818:48, 27 November 2013 diff hist +31 Fasta No edit summary
- 18:4718:47, 27 November 2013 diff hist +116 Fasta No edit summary
- 18:4418:44, 27 November 2013 diff hist 0 Fasta No edit summary
- 18:4418:44, 27 November 2013 diff hist +1 Fasta →Example
- 18:4318:43, 27 November 2013 diff hist −5,515 Fasta No edit summary
- 18:3418:34, 27 November 2013 diff hist +6,504 N Fasta Created page with "This option create a fasta file from a sequencing data file. <classdiagram type="dir:LR"> [One bam file{bg:orange}]->[sequencing data|random base (-doFasta 1);consensus base..."
- 18:2418:24, 27 November 2013 diff hist +29 MediaWiki:Sidebar No edit summary
28 June 2013
- 14:0014:00, 28 June 2013 diff hist +2 Association →Score statistic
- 13:5913:59, 28 June 2013 diff hist +104 Association →Score statistic
11 June 2013
- 12:3812:38, 11 June 2013 diff hist +66 Error estimation →Error estimation using an outgroup and an error free individual
22 March 2013
- 19:1219:12, 22 March 2013 diff hist +66 MediaWiki:Sidebar No edit summary
- 19:1019:10, 22 March 2013 diff hist +130 MediaWiki:Sidebar No edit summary
- 16:2716:27, 22 March 2013 diff hist −33 ANGSD No edit summary
27 February 2013
- 12:1112:11, 27 February 2013 diff hist −72 Base quality →options
- 12:1012:10, 27 February 2013 diff hist −67 Error estimation →additional options
- 12:1012:10, 27 February 2013 diff hist −72 Allele Counts →options
- 12:1012:10, 27 February 2013 diff hist −72 Genotype Likelihoods →options
- 12:0812:08, 27 February 2013 diff hist −71 Genotype Likelihoods →options
- 12:0812:08, 27 February 2013 diff hist −72 Genotype Likelihoods →options
13 February 2013
- 11:5011:50, 13 February 2013 diff hist +278 Error estimation →example
12 February 2013
- 18:1218:12, 12 February 2013 diff hist −17 Error estimation →Error estimation using an outgroup and an error free individual
- 18:1218:12, 12 February 2013 diff hist +116 Error estimation →Error estimation using an outgroup and an error free individual
- 18:0618:06, 12 February 2013 diff hist +719 Error estimation →Error estimation using an outgroup and an error free individual
- 17:5317:53, 12 February 2013 diff hist −14 Error estimation method No edit summary current
- 17:5217:52, 12 February 2013 diff hist +1,483 N Error estimation method Created page with " The estimated rates can roughly be intrepreted as relative error rates. That is excess of errors in your sample compare to the error in the perfect indviduals. The idea is th..."
29 January 2013
- 19:1719:17, 29 January 2013 diff hist +1 Depth →Output
17 January 2013
- 20:2320:23, 17 January 2013 diff hist +16 Input →arguments
14 January 2013
4 December 2012
- 19:1019:10, 4 December 2012 diff hist −1,035 Bugs No edit summary
- 18:5818:58, 4 December 2012 diff hist +17 Bugs No edit summary
23 October 2012
- 21:1721:17, 23 October 2012 diff hist 0 MediaWiki:Sidebar No edit summary
- 21:1021:10, 23 October 2012 diff hist −2 MediaWiki:Sidebar No edit summary
- 20:4420:44, 23 October 2012 diff hist −2,321 Change log →Version notes
- 20:3620:36, 23 October 2012 diff hist 0 Citing angsd →Maf estimation from counts of alleles
- 20:3620:36, 23 October 2012 diff hist +2 Citing angsd →Maf estimation from counts of alleles
- 19:0919:09, 23 October 2012 diff hist +29 MediaWiki:Sidebar No edit summary
- 19:0819:08, 23 October 2012 diff hist +33 MediaWiki:Sidebar No edit summary
16 October 2012
- 15:5515:55, 16 October 2012 diff hist 0 MediaWiki:Sidebar No edit summary
- 15:5015:50, 16 October 2012 diff hist +4 Citing angsd →Maf estimation from counts of alleles
- 15:5015:50, 16 October 2012 diff hist −2 Citing angsd →Maf estimation from counts of alleles
- 15:4815:48, 16 October 2012 diff hist +7 MediaWiki:Sidebar No edit summary
- 15:4415:44, 16 October 2012 diff hist −13 Error estimation →example
- 15:4115:41, 16 October 2012 diff hist −380 Installation →Misc folder
10 October 2012
- 21:0021:00, 10 October 2012 diff hist −29 Major Minor →From genotype likelihood data
- 21:0021:00, 10 October 2012 diff hist −1 Major Minor →From alignment data
- 20:5920:59, 10 October 2012 diff hist +17 Major Minor →From genotype probability data
- 20:1020:10, 10 October 2012 diff hist +9 MediaWiki:Sidebar No edit summary
- 20:1020:10, 10 October 2012 diff hist +1 Genotype calling →example
- 20:0920:09, 10 October 2012 diff hist +1,248 Genotype calling →Genotype calling
- 18:3818:38, 10 October 2012 diff hist −143 Genotype calling →Genotype calling
- 16:4916:49, 10 October 2012 diff hist +63 Association →example
- 15:1815:18, 10 October 2012 diff hist +20 Association →example
- 15:1615:16, 10 October 2012 diff hist +40 Association →example
- 15:0215:02, 10 October 2012 diff hist +346 Association →Score statistic
- 15:0015:00, 10 October 2012 diff hist +143 Association →Case control association using allele frequencies
- 14:5014:50, 10 October 2012 diff hist −6 Association No edit summary
- 14:5014:50, 10 October 2012 diff hist +95 Association →Case control association using allele frequencies
- 14:2414:24, 10 October 2012 diff hist +18 MediaWiki:Sidebar No edit summary
- 14:2414:24, 10 October 2012 diff hist +9 MediaWiki:Sidebar No edit summary
- 11:2411:24, 10 October 2012 diff hist +228 Input →genotype probability files
28 September 2012
- 16:2616:26, 28 September 2012 diff hist +1 Input →optional arguments
24 September 2012
- 17:3117:31, 24 September 2012 diff hist −16 Installation →Download
- 15:2915:29, 24 September 2012 diff hist −53 Filters →Selected Sites
- 13:5513:55, 24 September 2012 diff hist +123 Citing angsd →Methods
- 13:3513:35, 24 September 2012 diff hist +260 N Gatk Created page with "McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo MA (2010). The Genome Analysis Toolkit: a MapReduce ..."
- 13:3413:34, 24 September 2012 diff hist +80 Citing angsd No edit summary
- 13:3213:32, 24 September 2012 diff hist +175 N SoapSNP Created page with "Li R, Li Y, Fang X, Yang H, Wang J, Kristiansen K, Wang J. SNP detection for massively parallel whole-genome resequencing. Genome Res. 2009 Jun;19(6):1124-32. Epub 2009 May 6." current
- 13:2813:28, 24 September 2012 diff hist −7 Citing angsd No edit summary
- 13:2813:28, 24 September 2012 diff hist −179 Skotte Blanked the page current
- 13:2713:27, 24 September 2012 diff hist +179 N Skotte2012 Created page with "Line Skotte, Thorfinn Sand Korneliussen, Anders Albrechtsen. Association testing for next-generation sequencing data using score statistics. Genet Epidemiol. 2012 Jul;36(5):43..."
- 13:2513:25, 24 September 2012 diff hist −221 SuYeon Redirected page to Kim2011 current
- 13:2513:25, 24 September 2012 diff hist +242 N Kim2011 Created page with "Kim SY, Lohmueller KE, Albrechtsen A, Li Y, Korneliussen T, Tian G, Grarup N, Jiang T, Andersen G, Witte D, et al., 2011. Estimation of allele frequency and association mappin..."
- 13:0713:07, 24 September 2012 diff hist +26 Filters No edit summary
- 13:0613:06, 24 September 2012 diff hist +24 Filters No edit summary
- 13:0513:05, 24 September 2012 diff hist +72 Filters No edit summary
21 September 2012
- 15:4715:47, 21 September 2012 diff hist +376 N Citing angsd Created page with "Currently there is not publication for angsd. However, many of the method implimented here are published. **Methods** allele estimation from genotype likelihoods ;- doMaf ..."
- 15:4315:43, 21 September 2012 diff hist +29 MediaWiki:Sidebar No edit summary
- 15:2715:27, 21 September 2012 diff hist +1,787 SNP calling No edit summary
- 15:1015:10, 21 September 2012 diff hist −36 MediaWiki:Sidebar No edit summary
20 September 2012
- 15:5015:50, 20 September 2012 diff hist +392 Error estimation No edit summary
19 September 2012
- 18:1518:15, 19 September 2012 diff hist +281 Genotype Likelihoods →output genotype likelihoods
- 18:0318:03, 19 September 2012 diff hist +2,006 Genotype Likelihoods →output genotype likelihoods
- 18:0018:00, 19 September 2012 diff hist +1 Genotype Likelihoods No edit summary
- 17:4817:48, 19 September 2012 diff hist +915 Genotype Likelihoods No edit summary
- 17:3517:35, 19 September 2012 diff hist +36 Genotype Likelihoods →Genotype likelihoods from alignments
- 17:2317:23, 19 September 2012 diff hist +296 Base quality No edit summary
- 17:2217:22, 19 September 2012 diff hist +15 Base quality →Example
- 17:2117:21, 19 September 2012 diff hist −21 Base quality No edit summary
- 17:2017:20, 19 September 2012 diff hist +353 Base quality No edit summary
- 17:1117:11, 19 September 2012 diff hist +196 N Base quality Created page with "=Base quality counts= Counts the number of bases for each quality. ==Example== Print the individuals depth from bam files <pre> ./angsd -out out -doCounts 1 -doQsDist 1 -ba..."
- 17:0317:03, 19 September 2012 diff hist +42 Allele Counts →options
- 16:5816:58, 19 September 2012 diff hist +44 MediaWiki:Sidebar No edit summary
- 16:5616:56, 19 September 2012 diff hist +106 Allele Counts →options
- 16:5316:53, 19 September 2012 diff hist +251 Allele Counts No edit summary
17 September 2012
- 16:1516:15, 17 September 2012 diff hist +6 Genotype Likelihoods →soapSNP
- 16:0416:04, 17 September 2012 diff hist −34 Genotype Likelihoods →Genotype likelihoods from alignments
16 July 2012
- 18:3918:39, 16 July 2012 diff hist +184 Genotype Likelihoods →Samtools
- 18:1618:16, 16 July 2012 diff hist −70 Genotype Likelihoods →soapSNP
22 June 2012
- 16:0016:00, 22 June 2012 diff hist +64 Genotype Likelihoods →Genotype likelihoods from alignments
21 June 2012
- 16:5416:54, 21 June 2012 diff hist +97 Genotype Likelihoods →Genotype likelihoods from alignments
- 11:4511:45, 21 June 2012 diff hist +30 Association →Score statistic
- 11:4211:42, 21 June 2012 diff hist −97 Association →Association study
- 11:3411:34, 21 June 2012 diff hist +1,043 Association →Association
- 10:2310:23, 21 June 2012 diff hist +242 Beagle input →output
- 10:2110:21, 21 June 2012 diff hist +1,687 N Beagle input Created page with "Beagle haplotype imputation and be performed directly on genotype likelhoods. To generate beagle input file use ; -doGlf 2 In order to make this file the major and minor all..."
- 10:1210:12, 21 June 2012 diff hist +32 Association →Association
- 10:1110:11, 21 June 2012 diff hist +271 N Example of a covariate file Created page with "1 0 0 1 <br> 1 0.1 0 0 <br> 2 0 1 0 <br> 2 0 1 0 <br> 2 0.1 0 1 <br> 1 0 0 1 <br> 1 0.3 0 0 <br> 2 0 0 0 <br> 1 0 0 0 <br> 2 0.2 0 1 <br> 1 0 1 0 <br> 1 0 0 0 <br> 1 0.1 0 0 <..." current
- 10:1110:11, 21 June 2012 diff hist −1 Association →Score statistic
- 10:1010:10, 21 June 2012 diff hist +271 N Example of a covariance file Created page with "1 0 0 1 <br> 1 0.1 0 0 <br> 2 0 1 0 <br> 2 0 1 0 <br> 2 0.1 0 1 <br> 1 0 0 1 <br> 1 0.3 0 0 <br> 2 0 0 0 <br> 1 0 0 0 <br> 2 0.2 0 1 <br> 1 0 1 0 <br> 1 0 0 0 <br> 1 0.1 0 0 <..." current
- 10:1010:10, 21 June 2012 diff hist +364 N Example of a quantitative phenotype file Created page with "-999<br> 2.06164722761138<br> -0.091935218675602<br> -0.287527686061831<br> -999<br> -999<br> -1.20996664036026<br> 0.0188541092307412<br> -2.1122713873334<br> -999<br> -1.329..." current