ANGSD: Analysis of next generation Sequencing Data

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Dead-end pages

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The following pages do not link to other pages in angsd.

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  1. ANGSD
  2. Allele Counts
  3. Authors
  4. Base quality
  5. Bugs
  6. Changes
  7. Covariance matrix for PCA
  8. Depth
  9. Direct Ancestry
  10. DistAngsd
  11. Error estimation method
  12. Example of a covariance file
  13. Example of a covariate file
  14. Example of a quantitative phenotype file
  15. Example of cases control phenotype file
  16. Fst
  17. Fst correctness
  18. Gatk
  19. Glcomparison
  20. Glf files
  21. HWE and Inbreeding estimates
  22. Haploid calling
  23. Inbreed
  24. Input
  25. Installation
  26. Kim2011
  27. LD
  28. Li2010
  29. Li2011
  30. Majorminor
  31. Memory Usage
  32. Misc example
  33. Mismatch
  34. NgsRelate
  35. Nielsen2012
  36. Orlando2013
  37. PostFreq
  38. Rasmussen2011
  39. Regionfile
  40. SNP Calling
  41. Safv3
  42. Skotte
  43. Skotte2012
  44. SnpFilters
  45. SoapSNP
  46. Supersim
  47. Temp
  48. Test
  49. ThetaStat
  50. Thorfinn

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